PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00908.1.p
Common NameEUGRSUZ_C00908, LOC104436500
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 314aa    MW: 34219.9 Da    PI: 9.3715
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00908.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.2e-13136180347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+  ++ + +++G+g+W+ I+r   ++Rt+ q+ s+ qk+
  Eucgr.C00908.1.p 136 PWTEEEHRTFLMGLEKMGKGDWRGISRNYVTTRTPTQVASHAQKF 180
                       8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577128No hitNo description
PROSITE profilePS501588.779318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.808129185IPR017930Myb domain
SMARTSM007173.1E-9133183IPR001005SANT/Myb domain
SuperFamilySSF466891.35E-15135186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-11135176IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-16135184IPR006447Myb domain, plants
CDDcd001673.89E-9136181No hitNo description
PfamPF002492.6E-10136179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRKCSRCGN IGHNSRTCTT FMGAASSCGL KLFGVQLDLS SSSPPSSSAS SGSAHPYSLV  60
IKKSLSMDRL SSSSASSSSP SSSLSSPRVL ADEHCNKTSL GYLSDGLAAR SQEKRKASQP  120
VRLNWCCRMI ELLGVPWTEE EHRTFLMGLE KMGKGDWRGI SRNYVTTRTP TQVASHAQKF  180
FLRQASLNKK KRRSSLFDMM GRCSTFHEQS EPPRLIRTES SLRYEVVPLL AMSTFKPGDE  240
ERDREPHDSI SRPPSLCDLA NPLELKPSPV NPIKNPSLSH AAPDLELTLA APMPLDQNET  300
SPSSLFIGSI SVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00908.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047590.10.0PREDICTED: uncharacterized protein LOC104436500 isoform X1
TrEMBLA0A059CMT60.0A0A059CMT6_EUCGR; Uncharacterized protein
STRINGXP_010047590.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54962747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-40MYB_related family protein