PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.C00865.3.p | ||||||||
Common Name | EUGRSUZ_C00865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 206aa MW: 23022.9 Da PI: 10.2671 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.9 | 4.8e-13 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l +v+++G+g Wk I r R+ ++k++w++ Eucgr.C00865.3.p 5 KQKWTQEEEEALRAGVAKHGTGKWKDIQRDPEfnkflFSRSNIDLKDKWRNM 56 79********************************99989***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.452 | 1 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-9 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-10 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-15 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.95E-21 | 6 | 57 | No hit | No description |
SuperFamily | SSF46689 | 8.61E-15 | 6 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00526 | 7.0E-20 | 114 | 179 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 3.81E-16 | 114 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.9E-15 | 116 | 186 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 26.059 | 116 | 184 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 2.9E-12 | 118 | 177 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MGNPKQKWTQ EEEEALRAGV AKHGTGKWKD IQRDPEFNKF LFSRSNIDLK DKWRNMIGGA 60 SGQGQRDKSR AKAKASSDAP STLPSLPNAP NVPVSDEATA EPATDGAQRI ADDGKNTPRY 120 NAMIFEALQT LKDPNGSDTA AIFNYIEKRQ EVPQNFRRLL SSRLRRLVAQ EKLEKVQNCF 180 KIKEIASFET KTPAPKEQDV RPKQL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.C00865.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047536.1 | 1e-151 | PREDICTED: single myb histone 4 isoform X2 | ||||
Refseq | XP_018725342.1 | 1e-151 | PREDICTED: single myb histone 4 isoform X1 | ||||
Swissprot | F4IEY4 | 6e-54 | TRB5_ARATH; Telomere repeat-binding factor 5 | ||||
TrEMBL | A0A059CM03 | 1e-150 | A0A059CM03_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059CMN4 | 1e-150 | A0A059CMN4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047536.1 | 1e-150 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 1e-47 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.C00865.3.p |
Publications ? help Back to Top | |||
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