PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00865.2.p
Common NameEUGRSUZ_C00865, LOC104436458
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 279aa    MW: 30852.8 Da    PI: 7.2722
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00865.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.28.1e-13556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +++WT+eE+e l  +v+++G+g Wk I r          R+  ++k++w++ 
  Eucgr.C00865.2.p  5 KQKWTQEEEEALRAGVAKHGTGKWKDIQRDPEfnkflFSRSNIDLKDKWRNM 56
                      79*******************************999989***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.452161IPR017930Myb domain
SMARTSM007176.5E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-15557IPR009057Homeodomain-like
PfamPF002491.5E-9556IPR001005SANT/Myb domain
CDDcd116601.45E-21657No hitNo description
SuperFamilySSF466891.51E-14658IPR009057Homeodomain-like
SMARTSM005267.0E-20114179IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.62E-16114196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.1E-15116186IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150426.059116184IPR005818Linker histone H1/H5, domain H15
PfamPF005385.0E-12118177IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGNPKQKWTQ EEEEALRAGV AKHGTGKWKD IQRDPEFNKF LFSRSNIDLK DKWRNMIGGA  60
SGQGQRDKSR AKAKASSDAP STLPSLPNAP NVPVSDEATA EPATDGAQRI ADDGKNTPRY  120
NAMIFEALQT LKDPNGSDTA AIFNYIEKRQ EVPQNFRRLL SSRLRRLVAQ EKLEKVQNCF  180
KIKEIASFET KTPAPKEQDV RPKQLQPVVN ANFLETVDEA AVAAAYKIAD AENKSFDAAE  240
SVKEAERISK MAEDADAMLQ MALGILEKCS RDEMVLVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00865.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047536.10.0PREDICTED: single myb histone 4 isoform X2
TrEMBLA0A059CMN40.0A0A059CMN4_EUCGR; Uncharacterized protein
STRINGXP_010047536.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-55MYB_related family protein