PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00723.1.p
Common NameEUGRSUZ_C00723
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 278aa    MW: 30894.9 Da    PI: 5.8744
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00723.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.6e-161562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed++l d+++ +G g W+ I+++ g++R++k+c+ rw++yl
  Eucgr.C00723.1.p 15 RGAWTAREDKILTDYIEVHGEGKWRNIPKKAGLKRCGKSCRMRWLNYL 62
                      89********************************************97 PP
2Myb_DNA-binding49.21.2e-1568110145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+
  Eucgr.C00723.1.p  68 RGNITSDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWN 110
                       7999******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5571062IPR017930Myb domain
SuperFamilySSF466892.71E-2913109IPR009057Homeodomain-like
SMARTSM007172.3E-131464IPR001005SANT/Myb domain
PfamPF002495.1E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-231669IPR009057Homeodomain-like
CDDcd001671.92E-101762No hitNo description
PROSITE profilePS5129423.24663117IPR017930Myb domain
SMARTSM007171.5E-1467115IPR001005SANT/Myb domain
PfamPF002491.0E-1368111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-2370115IPR009057Homeodomain-like
CDDcd001671.40E-1072113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRSPCCSKE EGLNRGAWTA REDKILTDYI EVHGEGKWRN IPKKAGLKRC GKSCRMRWLN  60
YLRPDIKRGN ITSDEEDLIL RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN ANLAKREQGG  120
KKPNPSKTEK IKPIAASEVK QDETQNPVLV GDSALRNKDI VTLANSETTK SGQSSEYESS  180
DVSLPASMSR EEPSLEQLML DCTVGESDLL DILDGSDFRF NEFEDISQVM NSVENEAMSK  240
NNNVGAASPG QAHNLIIPAD LCLEVVLGDF RISISKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-261311625127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00723.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047391.10.0PREDICTED: transcription factor WER
TrEMBLA0A059CMZ80.0A0A059CMZ8_EUCGR; Uncharacterized protein
STRINGXP_010047391.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-60MYB family protein