PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00605.1.p
Common NameEUGRSUZ_C00605
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 837aa    MW: 91942.2 Da    PI: 6.1208
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00605.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.5e-191775357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Eucgr.C00605.1.p 17 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                      5679*****************************************************97 PP
2START179.81.6e-561613692205
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++   v+e+l+d++ W ++++++++ +v+ssg  g+++
  Eucgr.C00605.1.p 161 IAEETLTEFLSKATGTAVEWVQLPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPS-RVAEILKDRPSWYRDCRAVDVANVLSSGngGTVE 252
                       789*******************************************************.8888888888************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++l+a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++l
  Eucgr.C00605.1.p 253 LLYMQLYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSINNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVL 345
                       *********************************************9988899***************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXXXX CS
             START 182 rslvksglaegaktwvatlqrqce 205
                       r+l++s++  +++t++a+l+++++
  Eucgr.C00605.1.p 346 RPLYESSTLLAQRTTMAALRNLRQ 369
                       ********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.581276IPR001356Homeobox domain
SMARTSM003891.3E-151480IPR001356Homeobox domain
CDDcd000861.25E-161777No hitNo description
SuperFamilySSF466895.56E-171780IPR009057Homeodomain-like
PfamPF000461.6E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-181975IPR009057Homeodomain-like
CDDcd146861.14E-669108No hitNo description
PROSITE profilePS5084826.098151379IPR002913START domain
CDDcd088751.97E-80155370No hitNo description
Gene3DG3DSA:3.30.530.203.3E-23160366IPR023393START-like domain
SuperFamilySSF559611.13E-37160371No hitNo description
SMARTSM002341.4E-40160370IPR002913START domain
PfamPF018525.2E-54161369IPR002913START domain
PfamPF086707.2E-52695835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MAVTSACKDK MGIDNGKYVR YTPEQVEALE RLYHECPKPS SLRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENSYFRQQ  120
TQNATLATTD TSCESVVTSG QHHLTPQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW  180
VQLPGMKPGP DSIGIIAISH GCTGVAARAC GLVGLEPSRV AEILKDRPSW YRDCRAVDVA  240
NVLSSGNGGT VELLYMQLYA PTTLAPARDF WLLRYTSVME DGSLVVCERS INNTQNGPSM  300
PPVQHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPWS VPEVLRPLYE SSTLLAQRTT  360
MAALRNLRQI SQEVSQPNVT GWGRRPAALR ALAIYLDRGF NEAVNGFMDD GWSMLESDGV  420
DDVTLLINSS PAKMAGVNIS YASGFPSMTS AVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADSSIDAYSA AAIKASPCNM PGTRIGGFGS QVILPLAHTI EHEEFMEVVK LENMGHYRDD  540
MIMPSDIFLL QLCNGVDENA VGTCAELLFA PIDASFSDDA PIIPSGFRII PLDPGSDASS  600
PNRTLDLASA LDVGPTGNKA VGDNSGHSGN TKSVMTIAFQ FAFELHLQEN VASMARQYLR  660
SIIASVQRVA LALSPTNLGC HASLRPPPGS PEAHTLARWI CQSYRSFLGV ALLKNEAADS  720
LLKNLWHHSD AILCCSLRAA PVFTFANQAG LDMLETTLIA LQDITLEKIF DDNGRKTLCS  780
EFPQIMQQGF MCLQGGICLS SMGRPISYER AVAWKVLNEE ETAHCICFMF VNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00605.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047286.10.0PREDICTED: homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A059CMJ70.0A0A059CMJ7_EUCGR; Uncharacterized protein
STRINGXP_010047286.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]