PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00590.1.p
Common NameEUGRSUZ_C00590
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 167aa    MW: 18027.4 Da    PI: 4.627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00590.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.2e-152441055
               AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +++g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Eucgr.C00590.1.p  2 RNWGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 44
                      57**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-26153IPR001471AP2/ERF domain
SMARTSM003807.0E-27158IPR001471AP2/ERF domain
CDDcd000184.87E-28154No hitNo description
PROSITE profilePS5103220.152152IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18253IPR016177DNA-binding domain
PfamPF008471.2E-9244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MRNWGKWVSE IREPRKKSRI WLGTFPTPEM AARAHDVAAL SIKGSSAILN FPELIGLLPR  60
PISLSPRDVQ AAALKAAQMD KFDTITTSTA SSSSSMSPSS SLVSAMDLSE TSVELSEIIE  120
LPSLGTSYEL TRPSSEFVFV DSVDGWLYHP PWLGASFDDE CGYVGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-142532173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00590.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018725269.11e-116PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-61DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A059CLN11e-116A0A059CLN1_EUCGR; Uncharacterized protein
STRINGXP_010047241.11e-111(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-59ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]