PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.C00449.3.p

Common Name

EUGRSUZ_C00449

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 305aa MW: 33928.8 Da PI: 9.2055

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.C00449.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	91	106	1	16
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 +kC++C+ks+s+k n+ Eucgr.C00449.3.p 91 FKCKKCNKSYSSKNNF 106 89**********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF53335	1.36E-26	137	294	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	1.2E-25	153	283	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
CDD	cd02440	1.61E-9	173	279	No hit	No description
Pfam	PF08241	8.1E-19	174	274	IPR013216	Methyltransferase type 11

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0032259	Biological Process	methylation
GO:0080167	Biological Process	response to karrikin
GO:0010287	Cellular Component	plastoglobule
GO:0008168	Molecular Function	methyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MASSSMHQLS FARHPLLPRT CRLQPRPRFS SVRFPSFSVR ASSAVAVELD TGTQKDPTLD 60 GEIFSCPICY EPLIRRGPSG LNLEAVYRSG FKCKKCNKSY SSKNNFLDLT LTAGLRDYVE 120 VKPARTELFR SPVVSFLYER GWRQNFNQSG FPGQDEEFKM AQEYFKPAEG GLLVDVSCGS 180 GLFSRKFAKS GTYSGVIPLD YSENMLRQCY DFIKQDDAVL KANLALVRAD VSRLPFSSCS 240 VDAVHAGAAL HCWPSPSNAI AEITRVLRSG GVFVGTTFLR YTPSTPWIIL PFRQVHLYAY 300 SSVH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.C00449.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010047200.1	0.0	PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic
Swissprot	Q0WPT7	1e-141	Y2104_ARATH; Uncharacterized methyltransferase At2g41040, chloroplastic
TrEMBL	A0A059CKY5	0.0	A0A059CKY5_EUCGR; Uncharacterized protein
STRING	XP_010047200.1	0.0	(Eucalyptus grandis)

Link Out ? help Back to Top
Phytozome	Eucgr.C00449.3.p

Publications ? help Back to Top
Vidi PA, et al. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. J. Biol. Chem., 2006. 281(16): p. 11225-34 [PMID:16414959] Ytterberg AJ,Peltier JB,van Wijk KJ Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes. Plant Physiol., 2006. 140(3): p. 984-97 [PMID:16461379] Lundquist PK, et al. The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis. Plant Physiol., 2012. 158(3): p. 1172-92 [PMID:22274653]