PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00434.4.p
Common NameEUGRSUZ_C00434, LOC104436149
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TALE
Protein Properties Length: 358aa    MW: 40015.4 Da    PI: 5.8062
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00434.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.6e-073073392254
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        +yp++e++++L +++gL+ +q+ +WF N+R +
  Eucgr.C00434.4.p 307 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 339
                       59*****************************87 PP
2ELK29.12.2e-10260281122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELKh+L+++Y+++++++++E++
  Eucgr.C00434.4.p 260 ELKHELKQGYKEKIVDIREEIL 281
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.2E-1995139IPR005540KNOX1
PfamPF037901.4E-1798138IPR005540KNOX1
SMARTSM012564.1E-27148203IPR005541KNOX2
PfamPF037916.1E-19153202IPR005541KNOX2
PfamPF037898.0E-7260281IPR005539ELK domain
PROSITE profilePS512139.969260280IPR005539ELK domain
SMARTSM011886.1E-4260281IPR005539ELK domain
PROSITE profilePS5007111.677280343IPR001356Homeobox domain
SMARTSM003896.7E-11282347IPR001356Homeobox domain
SuperFamilySSF466895.56E-16282346IPR009057Homeodomain-like
CDDcd000862.13E-11283344No hitNo description
Gene3DG3DSA:1.10.10.609.1E-25287344IPR009057Homeodomain-like
PfamPF059201.6E-17300339IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAYNHGQMPQ EQVPFHHYSD QGGHHQGRDG VHKFFSASIL RPQNFLRLDS EPSAHADDAS  60
AAAAAASYNN DDGAGEEEMV EDDDGGGGGG DYESARHKAE ILSHPLYEQL LNAHVSCLKI  120
ATPVDQLPRI DAQLTQSQRV VAKYSVLGNG GVVDGKELDQ FMTHYVLLLC SFKEQLQQHV  180
RVHAMEAVMA CWELEQALQS LTGVSPGEGT GATMSDDDED QDDSDAKLFD GSFDGHDSMG  240
FGPLVPTESE RSLMERVRQE LKHELKQGYK EKIVDIREEI LRKRRAGKLP GDTTSLLKAW  300
WQTHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSSSTV PKSKRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336356RKRNWHSNPSSSTVPKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00434.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047185.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
RefseqXP_010047187.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X3
SwissprotP480001e-170KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A059CKM30.0A0A059CKM3_EUCGR; Uncharacterized protein
TrEMBLA0A059CM700.0A0A059CM70_EUCGR; Uncharacterized protein
STRINGXP_010047185.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-164KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]