PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HD-ZIP

Protein Properties

Length: 235aa MW: 26098.1 Da PI: 7.7047

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.C00074.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.1e-19	108	162	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq Lee F+ + +++ ++++ LA++l+L+ rqV vWFqNrRa+ k Eucgr.C00074.1.p 108 RKKLRLTREQSALLEESFKLHTTLTPAQKQSLADQLKLKPRQVEVWFQNRRARSK 162 678899***********************************************98 PP
2	HD-ZIP_I/II	119.2	2.2e-38	108	196	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq++lLEesF+ +++L+p +K++la +L+l+prqv+vWFqnrRAR k+kq+E+d+++Lk+++++l++en+rL+ke +eLr+ Eucgr.C00074.1.p 108 RKKLRLTREQSALLEESFKLHTTLTPAQKQSLADQLKLKPRQVEVWFQNRRARSKLKQTEVDCQFLKKCCETLSDENRRLKKELQELRS 196 69*************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.91E-18	85	165	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-18	92	162	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.714	104	164	IPR001356	Homeobox domain
SMART	SM00389	3.4E-17	106	168	IPR001356	Homeobox domain
CDD	cd00086	2.05E-17	108	165	No hit	No description
Pfam	PF00046	3.8E-16	108	162	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	139	162	IPR017970	Homeobox, conserved site
Pfam	PF02183	2.4E-9	164	196	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	3.9E-16	164	204	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MGDIEEACNT GLFLGLSVGG STTKRKEEKK KNKQNNDAPS TVGLGLSFSI NCSSSKVEAD 60 DHPWDSINNA EYPARSSFHN SFVDQSPDDH ISPPRTSNDD GGDFNGGRKK LRLTREQSAL 120 LEESFKLHTT LTPAQKQSLA DQLKLKPRQV EVWFQNRRAR SKLKQTEVDC QFLKKCCETL 180 SDENRRLKKE LQELRSSSSP YVQGPGTAAV MLCPSCEELT RGNSEATRKE NCDI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	164	RRARSKLKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.C00074.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010046899.1	1e-174	PREDICTED: homeobox-leucine zipper protein HAT22
TrEMBL	A0A059CJI4	1e-173	A0A059CJI4_EUCGR; Uncharacterized protein
STRING	XP_010046899.1	1e-173	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23974	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	5e-53	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Eucgr.C00074.1.p
Entrez Gene	104435899