PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00055.1.p
Common NameEUGRSUZ_C00055, LOC104435877
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 358aa    MW: 38885.6 Da    PI: 8.0309
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.34.5e-12527326
                      S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                       elCr+f+r G C+yG+rCkF H+
  Eucgr.C00055.1.p  5 KELCRNFQR-GSCQYGERCKFLHP 27
                      69*******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.037229IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6330IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9527IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-9527IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MPLRKELCRN FQRGSCQYGE RCKFLHPTQQ QSRPNAFGFG MHGGSNQQQK PNPFGFGVHE  60
GSNQQQKPNP FGFGVQGSSQ PRAAAAPLHN QFKPFENKWT RFSPISNASG TASYHSDNHS  120
QSGNHKCTDP ESCKRVIAED FEHERPSWKL TCYGHCKYAP CDISGDISYG ELRAAAYDDA  180
KRGLSLQSIV ERERNALNFK LSEFENLLHS PYVAPPSSTA SQSALLGFGA NTFSLSAQNT  240
GQSVASSFGA PHASPSAGGS SPYVPSNNAL GSLNSSSTLQ QTANAFGQSY MSSGVSQQMP  300
NSTNNNFNIV VGQKAVDDQQ KNDVHKSGRE SRDASVWQKE KWSPGEIPEE APPDIFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00055.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046871.10.0PREDICTED: zinc finger CCCH domain-containing protein 46
SwissprotQ9FWS35e-70C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A059CKZ10.0A0A059CKZ1_EUCGR; Uncharacterized protein
STRINGXP_010046871.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.14e-71C3H family protein