PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03870.1.p
Common NameEUGRSUZ_B03870, LOC104433992
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 355aa    MW: 39834.2 Da    PI: 8.4449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03870.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05192211120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       + C +C+k+F+r  n++ H+
  Eucgr.B03870.1.p 192 FACAICSKTFNRYNNMQMHM 211
                       78*****************9 PP
2zf-C2H2163.4e-05276298123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk+F  k + ++H +++
  Eucgr.B03870.1.p 276 FMCRKCGKTFAVKGDWRTHEKNC 298
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.54E-5188215No hitNo description
Gene3DG3DSA:3.30.160.605.4E-5192211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.533192219IPR007087Zinc finger, C2H2
SMARTSM003550.86192214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
SMARTSM00355190239271IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.08E-6261296No hitNo description
Gene3DG3DSA:3.30.160.608.4E-6272296IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704276296IPR007087Zinc finger, C2H2
SMARTSM0035535276296IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGFRDYLATG KEEPCHQPPT FIEWLKPSIS TSSPSSSSSS CLTEPVHLAK PSTFVDSPNS  60
FHQQQQQEQR FLRETIQCLP LLSKLSETKP LKQEEGDEEE VTVVGEGRER QHGVGELRAA  120
NVAVGLHIGL PLGGVDCGYG DNLEKSKHGF DELLIKEAVH KRNLLHGYSG FNAESRFWIP  180
TPAQILVGPM QFACAICSKT FNRYNNMQMH MWGHGSEYRK GPDSLKGTQP AAMLRLPCYC  240
CAQGCKNNIN HPRAKPLKDF RTLQTHYKRK HGAKPFMCRK CGKTFAVKGD WRTHEKNCGK  300
LWYCTCGSDF KHKRSLKDHI RSFGRGHSPH PSLEGFEDEK ECVTTGSEDE LARS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03870.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045228.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD11e-123ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A059DB020.0A0A059DB02_EUCGR; Uncharacterized protein
STRINGXP_010045228.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-118WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]