PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03823.1.p
Common NameEUGRSUZ_B03823, LOC104433955
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 372aa    MW: 41281.1 Da    PI: 6.9527
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03823.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.96e-47231492128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        pGf+F+P+d el+++yL+kk+eg + ++e+ i+evd   +ePwdLp k++  +e+ew+fFs r +ky++g++++rat++gyWkatgk+++v+
  Eucgr.B03823.1.p  23 YPGFKFSPSDAELISHYLAKKLEGIDKSVEQLIPEVDFSAHEPWDLPaKSIVPSESEWFFFSVRGRKYPKGSQSKRATEHGYWKATGKERNVK 115
                       69***************************999***************666667899************************************* PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s +++++g+k+tLvf+ grapkg++t+W+mhey++
  Eucgr.B03823.1.p 116 S-SSAVIGTKRTLVFHLGRAPKGKRTEWIMHEYSM 149
                       *.999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5116167IPR003441NAC domain
PROSITE profilePS5100551.98722168IPR003441NAC domain
PfamPF023657.6E-2424148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDGVCSDGRD GRIVSMADAA SMYPGFKFSP SDAELISHYL AKKLEGIDKS VEQLIPEVDF  60
SAHEPWDLPA KSIVPSESEW FFFSVRGRKY PKGSQSKRAT EHGYWKATGK ERNVKSSSAV  120
IGTKRTLVFH LGRAPKGKRT EWIMHEYSMN AKSQNQQDSL VICRLRRSSQ FQMGGASDLT  180
QTSDVDRTDV SEGDNLAEGC ARNCSGSYNS HSVEQIESSS NSSHQKNSDG NEDFYADILK  240
DDIVKLDESS VSPTRDSLPT VPNNLEAELM SQDSQTLVQD FISPIPPFQG TANRRIRLRR  300
HKPERSSKIV LEMKANDSSA EKAEPQTGSS GPSERRTRVI ISQWLVYGIL IGLTLLFVYL  360
LGGFQLSIES R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-412116719167NAC domain-containing protein 19
3swm_B6e-412116719167NAC domain-containing protein 19
3swm_C6e-412116719167NAC domain-containing protein 19
3swm_D6e-412116719167NAC domain-containing protein 19
3swp_A6e-412116719167NAC domain-containing protein 19
3swp_B6e-412116719167NAC domain-containing protein 19
3swp_C6e-412116719167NAC domain-containing protein 19
3swp_D6e-412116719167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03823.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045181.10.0PREDICTED: NAC domain-containing protein 60
SwissprotQ9LXL94e-80NAC60_ARATH; NAC domain-containing protein 60
TrEMBLA0A059D9S10.0A0A059D9S1_EUCGR; Uncharacterized protein
STRINGXP_010045181.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104532533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.13e-77NAC domain containing protein 60
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]