PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03565.1.p
Common NameEUGRSUZ_B03565, LOC104433738
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 300aa    MW: 32514.6 Da    PI: 6.1459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03565.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-194796356
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      + GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g+
  Eucgr.B03565.1.p 47 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRGA 96
                      67******.**********965...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.06E-2845102No hitNo description
PROSITE profilePS5103220.69246103IPR001471AP2/ERF domain
SMARTSM003803.8E-3346109IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2147104IPR016177DNA-binding domain
PRINTSPR003673.9E-84758IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-2947103IPR001471AP2/ERF domain
PfamPF008477.4E-124995IPR001471AP2/ERF domain
PRINTSPR003673.9E-86985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDHLNFTVSS SPVNSPSPSK AKRKHQQQQT PPPLQTHQDD GAAPARFLGV RRRPWGRYAA  60
EIRDPTTKER HWLGTFDTAE EAALAYDRAA RSMRGAKART NFVYSDMPPG SSVTSLVSPD  120
EAHSDFAALF ISQHHHQQQE QPHHHHHGKS SNNPNHQLFY TPGSMSACNV DFTSGLPAEN  180
GWAADGYLGG GPYHPATSIA DFGDAARPQS YDEAELPPFP PDLSSCYGSG LDMGHGGWTD  240
MGFLGLQEQS IVPGPSNGLN MGFDPNELVE HGPLFGRMPQ VSDKGVDGFD LGSSSAYYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1841102971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03565.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044897.10.0PREDICTED: ethylene-responsive transcription factor LEP
TrEMBLA0A059D9620.0A0A059D962_EUCGR; Uncharacterized protein
STRINGXP_010044897.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.13e-34ERF family protein