PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B03553.1.p

Common Name

EUGRSUZ_B03553, LOC104433726

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Trihelix

Protein Properties

Length: 366aa MW: 39182.3 Da PI: 5.0506

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B03553.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.7	6.4e-28	50	144	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rWt+qe+l+Li+++r e+r+rrg+ +p+W++vs++++++g++r+p+qC+++w+nl+++ykkike+e + ++e++s +++ ++ Eucgr.B03553.1.p 50 RWTRQEILVLIQGKRVAETRVRRGRvggsafgsgHVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWEARTRDETESFWVMRND 142 8********************9777778888799*****************************************99999999999999 PP trihelix 85 le 86 l+ Eucgr.B03553.1.p 143 LR 144 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.4	50	116	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	7.2E-5	50	115	IPR009057	Homeodomain-like
Pfam	PF13837	1.0E-12	50	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MAAEQLSLGP AAAGDEVANG VEGRAAGDGL DDGGGGGGGG GGGRAPRLPR WTRQEILVLI 60 QGKRVAETRV RRGRVGGSAF GSGHVEPKWA SVSSYCKRHG VNRGPVQCRK RWSNLAGDYK 120 KIKEWEARTR DETESFWVMR NDLRRERKLP GFFDREVYDI LDHQGSSSSA AAVGHPEAEL 180 ALALAPASAT AADDEEAEEE RDVVFDSGRS AAAEDGLFSD FEQDDGGGGG ETPEKDVETP 240 VRVVDAAPAA AVPISEKQYE PVVLRGSQGP GHEKQPPPLN PEIGSTSGDG RKRKRPMAEA 300 DEEPVGVQYR LIDVLERNGK LLTAQLEAQN NNLRLDRDQR QDHTNGLLSV LNKLADAVGR 360 IADKL*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MAAEQLSLGP AAAGDEVANG VEGRAAGDGL DDGGGGGGGG GGGRAPRLPR WTRQEILVLI  60
QGKRVAETRV RRGRVGGSAF GSGHVEPKWA SVSSYCKRHG VNRGPVQCRK RWSNLAGDYK  120
KIKEWEARTR DETESFWVMR NDLRRERKLP GFFDREVYDI LDHQGSSSSA AAVGHPEAEL  180
ALALAPASAT AADDEEAEEE RDVVFDSGRS AAAEDGLFSD FEQDDGGGGG ETPEKDVETP  240
VRVVDAAPAA AVPISEKQYE PVVLRGSQGP GHEKQPPPLN PEIGSTSGDG RKRKRPMAEA  300
DEEPVGVQYR LIDVLERNGK LLTAQLEAQN NNLRLDRDQR QDHTNGLLSV LNKLADAVGR  360
IADKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B03553.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010044878.1	0.0	PREDICTED: trihelix transcription factor ASR3 isoform X2
Swissprot	Q8VZ20	1e-110	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A059D9X7	0.0	A0A059D9X7_EUCGR; Uncharacterized protein
STRING	XP_010044878.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-101	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Eucgr.B03553.1.p
Entrez Gene	104433726

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]