PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B03518.1.p

Common Name

EUGRSUZ_B03518, LOC104433695

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

SBP

Protein Properties

Length: 319aa MW: 34533.4 Da PI: 9.7877

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B03518.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.8	4.9e-41	24	100	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v+++g+eqrfCqqCsrfh+l efD+ krsCr+rL++hn+rrrk+q+ Eucgr.B03518.1.p 24 CLVDGCDSDLSKCRDYHRRHKVCELHSKTPKVIIRGQEQRFCQQCSRFHSLAEFDDVKRSCRKRLDGHNRRRRKPQP 100 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.3E-33	18	85	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.667	21	98	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-38	22	103	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-30	24	97	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MDSSSNGSLK RARAPGFGSQ VASCLVDGCD SDLSKCRDYH RRHKVCELHS KTPKVIIRGQ 60 EQRFCQQCSR FHSLAEFDDV KRSCRKRLDG HNRRRRKPQP DPLSLTAGRF LPSHQGTRFS 120 PFSGPQMFPA SALASCSWPG VVKVEDDTTS YNTPQLINFN ERNLSFPGST SSHFKGHIQF 180 PFLQGTSAAH LGASICKPAL NPNSTTGTGG NGNNARSSSS GLNRVVASER ALSLLSSPPA 240 ENSEKGLSRM MQLVPSTSAQ SLTTDLRYNR LGLGKPGNPG MDSESTGSGE LHYHGIFQSE 300 HAGLSANGQH QTPSFSWE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-27	24	97	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	97	KRSCRKRLDGHNRRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	SBP transcriptional regulator probably involved in the domestication of maize (PubMed:16079849). Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif (PubMed:25943393). May repress the growth of lateral branches in length and numbers (PubMed:25943393). {ECO:0000269\|PubMed:16079849, ECO:0000269\|PubMed:25943393}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B03518.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010044835.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_010044837.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_010044838.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_010044839.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_010044840.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_010044841.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_018724687.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16
Swissprot	Q49I55	3e-60	TGA1W_MAIZE; Teosinte glume architecture 1
TrEMBL	A0A059D8A9	0.0	A0A059D8A9_EUCGR; Uncharacterized protein
STRING	XP_010044835.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4111	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-50	SBP family protein

Link Out ? help Back to Top
Phytozome	Eucgr.B03518.1.p
Entrez Gene	104433695

Publications ? help Back to Top
Wang H,Studer AJ,Zhao Q,Meeley R,Doebley JF Evidence That the Origin of Naked Kernels During Maize Domestication Was Caused by a Single Amino Acid Substitution in tga1. Genetics, 2015. 200(3): p. 965-74 [PMID:25943393]