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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B03456.1.p | ||||||||
Common Name | EUGRSUZ_B03456, LOC104433640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | Trihelix | ||||||||
Protein Properties | Length: 410aa MW: 47045.7 Da PI: 6.9941 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.7 | 4.7e-26 | 101 | 180 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+++Li++rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k+ykk k ++++ s +++y++++e Eucgr.B03456.1.p 101 WVQDETRCLIALRREMDSLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEYKKAKYQDRG-----SAKMSYYKEIE 180 ******************************************************************998.....46788999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-5 | 91 | 163 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.455 | 93 | 157 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.9E-6 | 97 | 159 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 7.84E-29 | 99 | 164 | No hit | No description |
Pfam | PF13837 | 2.5E-20 | 100 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MYLSEKPRPI DFYKEESAPR DMIIEVVSSN GDIPPHHPHP HPHPHPHQHQ HPHPHQHPHQ 60 HQAPPAPPPP PPPQPHHQMI LGESSGEDLE VKAPKKRAET WVQDETRCLI ALRREMDSLF 120 NTSKSNKHLW EQISSKMREK GFDRSPTMCT DKWRNLLKEY KKAKYQDRGS AKMSYYKEIE 180 EILRERSKNN QYKSPTASAL KVDPYMQFSD KGIEDAGMTF GPVEASGRPT LNLERRLDHD 240 GHPLAITTAE AVAANGVPPW NWRETPGNGE SQSYGGRVIS VKWGDYTRRV GIDGTADSIK 300 EAIKSAFRLR TKRAFWLEDE DQVIRSLDRD MPLGNYNLQL DEGLAIKVCL YDESGHISVH 360 PEDKIFYTED DYRDFLARRG WTCLRELDGY RNIDNMDDLR PGGIYRGVT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 9e-46 | 95 | 178 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00141 | DAP | Transfer from AT1G13450 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B03456.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010044755.1 | 0.0 | PREDICTED: trihelix transcription factor GT-1 | ||||
Swissprot | Q9FX53 | 0.0 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A059D8Y4 | 0.0 | A0A059D8Y4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010044755.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B03456.1.p |
Entrez Gene | 104433640 |
Publications ? help Back to Top | |||
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