PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03113.4.p
Common NameEUGRSUZ_B03113
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 286aa    MW: 31215.2 Da    PI: 6.059
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03113.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.6e-165099255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  Eucgr.B03113.4.p 50 RSKHSVTEQRRRSKINERFQILRDLIPNS----DQKRDTASFLLEVIEYVRYLQ 99
                      899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1747111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-2047105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.3744898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-135099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.57E-1450102No hitNo description
SMARTSM003531.6E-1054104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MRSGKGSQEY EDFEEEDLNS KRDGPSSNVS NSSNSANPKD KSSDKAHAIR SKHSVTEQRR  60
RSKINERFQI LRDLIPNSDQ KRDTASFLLE VIEYVRYLQE KRNSHWRVQS VVSPPQAMKN  120
GSGPASSYPG KLEDNSTGTT PNMLASSQNT SEIDPGRDLS SKFMVQQSER PFPDAQPMEC  180
TADTASDQQE DLTIEGGTIS ISSVYSQGLL NSLTNALQTA GVDLSQARIS VQIDLGKRAN  240
RGVLATGTSI PMDHGSPNPG NSTMAHVTDA RGEEGLDQVQ KRQKT*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03113.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044357.10.0PREDICTED: transcription factor BIM2 isoform X2
SwissprotQ9CAA42e-91BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A059D7B30.0A0A059D7B3_EUCGR; Uncharacterized protein
STRINGXP_010044355.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-89BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]