PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B03113.1.p

Common Name

EUGRSUZ_B03113, LOC104433351

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 334aa MW: 36673.4 Da PI: 6.3225

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B03113.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.4	8.3e-16	50	99	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Eucgr.B03113.1.p 50 RSKHSVTEQRRRSKINERFQILRDLIPNS----DQKRDTASFLLEVIEYVRYLQ 99 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.85E-19	47	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-23	47	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.374	48	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.69E-14	50	103	No hit	No description
Pfam	PF00010	3.5E-13	50	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-12	54	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MRSGKGSQEY EDFEEEDLNS KRDGPSSNVS NSSNSANPKD KSSDKAHAIR SKHSVTEQRR 60 RSKINERFQI LRDLIPNSDQ KRDTASFLLE VIEYVRYLQE KVHKYEDSYQ GWSSEPTKLM 120 PWRNSHWRVQ SVVSPPQAMK NGSGPASSYP GKLEDNSTGT TPNMLASSQN TSEIDPGRDL 180 SSKFMVQQSE VVKQAMHVAV PVPVSVRSDD VISNHLQRPF PDAQPMECTA DTASDQQEDL 240 TIEGGTISIS SVYSQGLLNS LTNALQTAGV DLSQARISVQ IDLGKRANRG VLATGTSIPM 300 DHGSPNPGNS TMAHVTDARG EEGLDQVQKR QKT*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B03113.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010044355.1	0.0	PREDICTED: transcription factor BIM2 isoform X1
Refseq	XP_010044356.1	0.0	PREDICTED: transcription factor BIM2 isoform X1
Swissprot	Q9CAA4	1e-108	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A059D7L8	0.0	A0A059D7L8_EUCGR; Uncharacterized protein
STRING	XP_010044355.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5987	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-105	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Eucgr.B03113.1.p
Entrez Gene	104433351

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]