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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Eucgr.B03048.1.p |
Common Name | EUGRSUZ_B03048, LOC104433302 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family |
RAV |
Protein Properties |
Length: 365aa MW: 39809 Da PI: 9.4502 |
Description |
RAV family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Eucgr.B03048.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 41.3 | 4e-13 | 65 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV + +grW A+I++ ++r++lg+f ++eAa a++ a+++++g
Eucgr.B03048.1.p 65 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAMAYDVAAQRFRG 113
89****9888.8*********3.....5**********99************998 PP
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2 | B3 | 101.3 | 5.4e-32 | 197 | 302 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
f+k+ tpsdv+k++rlv+pk++ae+h ++ + +++ l +ed+ g++W+++++y+++s++yvlt+GW++Fvk++gL +gD+v F+ +
Eucgr.B03048.1.p 197 FEKAVTPSDVGKLNRLVIPKQHAEKHfplrngtSSATSKGVLLNFEDSGGKVWRFRYSYWNSSQSYVLTRGWSRFVKEKGLTAGDIVSFHQSA 289
89****************************99866777999*************************************************776 PP
SSEE..EEEEE-S CS
B3 87 rsefelvvkvfrk 99
e++l+++ +r+
Eucgr.B03048.1.p 290 GPEKQLHIGYRRR 302
6899999999997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048573 | Biological Process | photoperiodism, flowering |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MDGNSSCIDE LSSTSDSVCV PPPSKSSPPP LPPPPQSLCR HGSGTSVIVD SEGCVEAESR 60 KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA AMAYDVAAQR FRGGDAVTNF 120 KRKSEAEDYD LEAAFLSAHS KPEIVDMLRK HTYRDELEQS KRKCLNSNGG GKRASMTEVL 180 GDLSSPGGIA MVRQLLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLRNGTS SATSKGVLLN 240 FEDSGGKVWR FRYSYWNSSQ SYVLTRGWSR FVKEKGLTAG DIVSFHQSAG PEKQLHIGYR 300 RRSSLGGSGP VLPVQMVRLF GVNIFKVSAA GGGDDTGDWS GKRMREVELL SLGCNKKQMV 360 IGAL*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Choi D, et al.
iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis. Mol Plant, 2014. 7(5): p. 792-813 [PMID:24380880] - Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
TEMPRANILLO is a regulator of juvenility in plants. Sci Rep, 2014. 4: p. 3704 [PMID:24424565] - Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond. Ann. Bot., 2014. 114(7): p. 1459-70 [PMID:24812253] - Marín-González E, et al.
SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures. Plant Physiol., 2015. 169(2): p. 1214-24 [PMID:26243615] - Matías-Hernández L, et al.
TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation. Plant Physiol., 2016. 170(3): p. 1624-39 [PMID:26802039]
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