PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03047.1.p
Common NameEUGRSUZ_B03047, LOC104435569
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 300aa    MW: 33839.9 Da    PI: 7.4643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-06124143120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C+k+F+r  n++ H+
  Eucgr.B03047.1.p 124 FSCPVCSKTFNRYNNMQMHM 143
                       89*****************9 PP
2zf-C2H2130.0003209231123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +C+k+F  + + ++H +++
  Eucgr.B03047.1.p 209 FACRKCSKPFAVRGDWRTHEKNC 231
                       78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.88E-5120146No hitNo description
Gene3DG3DSA:3.30.160.601.9E-6124143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.054124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242124151IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SMARTSM00355260172204IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.28E-5192229No hitNo description
Gene3DG3DSA:3.30.160.601.4E-4195229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355110209229IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MQTSSLITCI SSSDSACLED DSLEDEDFVL LSLGPPGQHH HHHISKHPSY HHHHSIPKLG  60
QNEDKSLPSA TTTTANDHRH QDQSVTVALH IGLPTSGVCT NPNLIDGKYW IPSPAQILVG  120
PTQFSCPVCS KTFNRYNNMQ MHMWGHGSQY RKGPDSLKGT KPASSMLRLP CYCCAQGCRN  180
NIDHPRSRPL KDFRTLQTHY KRKHGAKPFA CRKCSKPFAV RGDWRTHEKN CGKLWFCICG  240
SDFKHKRSLK DHVRAFGDGH APHTVEVCEL EEEEEEEEED DGAIEDHYRR IVQGSGYFY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03047.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046596.10.0PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-114ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A059D6K90.0A0A059D6K9_EUCGR; Uncharacterized protein
STRINGXP_010046596.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-114C2H2-like zinc finger protein