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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B02663.1.p | ||||||||
Common Name | EUGRSUZ_B02663, LOC104433018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 248aa MW: 26914.2 Da PI: 6.3915 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00022 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Eucgr.B02663.1.p 88 FSCNYCKRKFYSSQALGGHQNAH 110 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.21E-6 | 86 | 116 | No hit | No description |
PROSITE profile | PS50157 | 11.406 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MLPRNSDSGT ENESSDFSTQ VASDACVQEI SVDPSKVTSA TSLDQDDVSL DLTLFCHSNA 60 PAEANAVGES NNTEAVDRAS VVKLPRVFSC NYCKRKFYSS QALGGHQNAH KRERTMAKRA 120 MRMGMFSNRY TSLASLPLHG ATFRSLGIEA HSGVHHQNAV APESRPAVLR GGAKFEKGCM 180 GLPMFVEEDD VVPLFWPGSF RQLDTRDCTS DPSPSVDYVI KGSNVNFVQV TKLPQIETPS 240 PDLTLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B02663.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043932.1 | 0.0 | PREDICTED: zinc finger protein 4 isoform X1 | ||||
Refseq | XP_010043934.1 | 0.0 | PREDICTED: zinc finger protein 4 isoform X1 | ||||
Refseq | XP_010043935.1 | 0.0 | PREDICTED: zinc finger protein 4 isoform X1 | ||||
TrEMBL | A0A059D685 | 0.0 | A0A059D685_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043932.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6672 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 1e-41 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B02663.1.p |
Entrez Gene | 104433018 |