PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02626.2.p
Common NameEUGRSUZ_B02626, LOC104432986
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 522aa    MW: 55838.8 Da    PI: 9.1852
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02626.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05628123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      + C+ C+k F r  nL+ H r H
  Eucgr.B02626.2.p  6 FICEVCNKGFQREQNLQLHRRGH 28
                      89*******************88 PP
2zf-C2H212.40.0004782104123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k++  +s+ k H + +
  Eucgr.B02626.2.p  82 WKCEKCSKRYAVQSDWKAHSKIC 104
                       58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.7E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.84E-8528No hitNo description
PROSITE profilePS5015710.99628IPR007087Zinc finger, C2H2
PfamPF121712.5E-5628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0052628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551304777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.84E-877102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK DVKRKVYLCP EPTCVHHDPS  60
RALGDLTGIK KHYSRKHGEK KWKCEKCSKR YAVQSDWKAH SKICGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAQESARH PSSLNTLGNN LYGNNIGLGL SHQVGSQLPI LQTHNHPPSN  180
MLRLGGASNS SNFSQPPHPM PPPPATFFKP EAADSLHDLP SHNPLSGLMQ LPNLQGNSSA  240
SQSNLFNLSF FGNNAAAASD NATTATAAAA NFPSQGFLGQ FNGGNNGSNQ PSGLFSDDRV  300
GSGFSSLFNA SAQNESVVAH MSATALLQKA AQMGSITSGN SSSLLGGLGS SSGGGGSAVN  360
RQMGSVNFSG GSGSFPDSGG KLPPQMESES HLRGLISSFA GGSSSIFGGG GGHEHENSFS  420
GFNESNMSLD HHHHHQDQSS ASFCNVNDAK LHQNLTTSMG GSDKLTLDFL GVGGMMRKRT  480
DGGFAHREQQ QQQHGTINMS SLDRDRKSEQ GSQPFGSSKM H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3478150371Zinc finger protein JACKDAW
5b3h_F5e-3478150371Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02626.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043896.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic
TrEMBLA0A059D6190.0A0A059D619_EUCGR; Uncharacterized protein
STRINGXP_010043896.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-99indeterminate(ID)-domain 5