PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02564.1.p
Common NameEUGRSUZ_B02564, LOC104432929
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 274aa    MW: 30354.4 Da    PI: 6.5774
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02564.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003196118123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C k F ++  L  H++ H
  Eucgr.B02564.1.p  96 FECQYCFKEFANSQALGGHQNAH 118
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.77E-693123No hitNo description
Gene3DG3DSA:3.30.160.602.9E-494122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2496123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSRDQIAREV STSSNLLSLT WVSENGGSSG SCAEKKLKLF GFELNPPKND PTCSKLESPE  60
GDESVNSSNT VKEKSSARAT TDHHHQVDDE SHNKKFECQY CFKEFANSQA LGGHQNAHKK  120
ERLKKKRLQI QARKASLHQY LQPLQNNLHL FNFQGSASTS SSGSWFFYEP YSNSSDHQFT  180
LYDESQISFS PVVDQDARFN GFDSDDLHQV LQYNPPNISF QQDSCMFPLT CGERSGGSYH  240
LPMDTAGSAG PKQISCKSLD LQLGLSVQSN IPG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02564.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043824.10.0PREDICTED: zinc finger protein 5
TrEMBLA0A059D5X40.0A0A059D5X4_EUCGR; Uncharacterized protein
STRINGXP_010043824.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.15e-15zinc finger protein 5