PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02487.1.p
Common NameEUGRSUZ_B02487, LOC104432861
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 472aa    MW: 51207.7 Da    PI: 8.6473
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02487.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-055173123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C +C+k F r  nL+ H r H
  Eucgr.B02487.1.p 51 FVCDICKKGFQRDQNLQLHRRGH 73
                      89*******************88 PP
2zf-C2H212.10.0006159177523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                       dCg++Fsrk+++ +H   +
  Eucgr.B02487.1.p 159 DCGTVFSRKDSFITHRAFC 177
                       9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.6E-65073No hitNo description
SMARTSM003550.0465173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5755173IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-45173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SMARTSM003558294124IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-5116150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.6E-6124149No hitNo description
SMARTSM00355240129149IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MSGNGLFSVR DPVQEPKANP INKRRNLPGT PDPDAEVVAL SPKSLMATHR FVCDICKKGF  60
QRDQNLQLHR RGHNLPWKLK RRTKDREQPR KRVYICPETT CVHHDPSRAL GDLTGVKKHY  120
SRKHGEKKWK CERCTKKYAV KSDWKAHSKI CGTREYKCDC GTVFSRKDSF ITHRAFCDAL  180
AEESTKFNPS NFRNEPTLAP PPSAATIPDN FRILGPEFAI PHLNSCGFSG SSSSAFLASV  240
FGSDRPEFVP TVPMSIFGSP SASFLGSGAS VLELPQCVKE EEESKSSISD AVSSLYGSSD  300
QNHPHQQSQG LMSATALLQK AAMLGATMAN PPLLNDMGLG LMNSSSSYFP NTTNFCSLSQ  360
NLNESLLSSL SSTVTCSPGG DHVLVFGDSD SSSPTADTEN TLSNMVMQAN GNVSRPRVVQ  420
GKLNHALVEG NLTRDFLGVG GKPRTHVNQQ GLADFASLGS LSADLSPVQF T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-33125188366Zinc finger protein JACKDAW
5b3h_F5e-33125188366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02487.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043728.10.0PREDICTED: protein indeterminate-domain 2
SwissprotQ9LVQ71e-104IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A059D4P60.0A0A059D4P6_EUCGR; Uncharacterized protein
STRINGXP_010043728.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-103C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]