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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Eucgr.B02453.1.p |
Common Name | EUGRSUZ_B02453, LOC104432834 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family |
AP2 |
Protein Properties |
Length: 459aa MW: 49950.1 Da PI: 5.9179 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Eucgr.B02453.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 52.8 | 9.5e-17 | 136 | 184 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
++GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g
Eucgr.B02453.1.p 136 EFRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDRAAIKFRG 184
69******************......55************************997 PP
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2 | AP2 | 40.7 | 5.8e-13 | 227 | 277 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ +++g
Eucgr.B02453.1.p 227 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDGEVEAARAYDKAAIRYNG 277
89********.7******5553..2.26**********99************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 459 aa
Download sequence Send
to blast |
MLDLNLNVLS AESSYQEEKL SDVSGNQMDE SGTSNSSIVN ADAGDDESSS ARAAGDVHTF 60 QFGIVKADGG GNDAVETKEL FPLKEEECSP GEMPMELSFG NGGSGSGGGS HARVMPQQQS 120 QQAKKSRRGP KSKSSEFRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAQA AARAYDRAAI 180 KFRGVDADIN FHMSDYEEDL KQMKSLSKED FVHILRRQST GFSRGSSKYR GVTLHKCGRW 240 EARMGQFLGK KYIYLGLFDG EVEAARAYDK AAIRYNGREA VTNFEPSSYE GQMIPVAMNE 300 GSDHNLELNL GMSAPSFGSS VKDADEHLPC HAETFSGIPN FASAVLGDSA LRGLSMTSHH 360 HSSQNCVYPR FFSNEEKDTE QRNEVPSSQG LHWVWPMRDQ VSTSAASVPP SSTAASSGFP 420 YSVPPYSAAM VASPLSRFPP PYTVASNSSR CNDQMTSP*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Publications
? help Back to Top |
- Lee DY,An G
Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] - Wang L, et al.
Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] - Dai Z,Wang J,Zhu M,Miao X,Shi Z
OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]
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