PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B02435.1.p | ||||||||
Common Name | EUGRSUZ_B02435 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WOX | ||||||||
Protein Properties | Length: 232aa MW: 26657.3 Da PI: 9.4672 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.1 | 2e-20 | 6 | 66 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a+++++++++l +++ ++V++WFqN++a++++ Eucgr.B02435.1.p 6 STRWCPTPEQLMILEEMYRSgVRTPNAAHIQQITAHLslygKIEGKNVFYWFQNHKARDRQ 66 58*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 120.2 | 8.5e-39 | 5 | 67 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 a+tRW+PtpeQ++iLee+y+sG+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk Eucgr.B02435.1.p 5 ASTRWCPTPEQLMILEEMYRSGVRTPNAAHIQQITAHLSLYGKIEGKNVFYWFQNHKARDRQK 67 689***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.042 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-6 | 4 | 71 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.15E-4 | 7 | 67 | No hit | No description |
Pfam | PF00046 | 4.5E-18 | 7 | 66 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-11 | 7 | 66 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-7 | 8 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MSPSASTRWC PTPEQLMILE EMYRSGVRTP NAAHIQQITA HLSLYGKIEG KNVFYWFQNH 60 KARDRQKLRR KLSKQLHNNH QCQLNNSLLY NHHHHPHYDH QHMIMNNHHN YHFLSFLHPQ 120 SPPPPPAAST DLQFAYYNPT STLITQGGFG DATAQVMNID KWTAEMSEKT TVEMEKLSKK 180 MYSDLKPMTI GAEVVSTLPV SLSRTALKTL DLFPTRATNL KEERNNLELS I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B02435.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF953930 | 0.0 | KF953930.1 UNVERIFIED: Eucalyptus grandis cultivar EG5 WOX13.1 protein-like (WOX13.1) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010046418.1 | 1e-107 | PREDICTED: WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A059D5E3 | 1e-174 | A0A059D5E3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010046418.1 | 1e-107 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7480 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 4e-46 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B02435.1.p |