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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.B02401.2.p | ||||||||
Common Name | EUGRSUZ_B02401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 191aa MW: 21247.3 Da PI: 4.6103 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ Eucgr.B02401.2.p 2 TPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43 9*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.781 | 1 | 47 | IPR017930 | Myb domain |
CDD | cd00167 | 7.49E-13 | 1 | 43 | No hit | No description |
SMART | SM00717 | 1.1E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.59E-12 | 2 | 47 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-14 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MTPQEERLVL ELHSKWGNRW SRIARKLPGR TDNEIKNYWR THMRKEAQEK KHALSSSSAS 60 SNISSSSSNN PTVDSLTTRE TGKESFYGTG GPGDMLTSTE KNIEEQGKSE SACSFDDIWK 120 EIALADGYGI LPIYDGYSEE SCNFSCPPMA SPTMEYNSDP LWLTDEEESK MFPVNQFISN 180 YGNGGAYITG * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.B02401.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097274 | 1e-35 | BT097274.1 Soybean clone JCVI-FLGm-21F20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043594.1 | 1e-139 | PREDICTED: transcription factor MYB59 | ||||
Swissprot | Q4JL84 | 2e-44 | MYB59_ARATH; Transcription factor MYB59 | ||||
Swissprot | Q9LX82 | 3e-44 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A059D5W7 | 1e-139 | A0A059D5W7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043594.1 | 1e-138 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 4e-46 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.B02401.2.p |
Publications ? help Back to Top | |||
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