PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 242aa MW: 27345.5 Da PI: 7.404

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B02401.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.2e-17	49	94	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ Eucgr.B02401.1.p 49 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 94 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	5.146	17	43	IPR017877	Myb-like domain
SuperFamily	SSF46689	8.77E-22	29	97	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.8E-10	29	55	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.823	44	98	IPR017930	Myb domain
SMART	SM00717	7.6E-17	48	96	IPR001005	SANT/Myb domain
Pfam	PF00249	9.1E-16	49	93	IPR001005	SANT/Myb domain
CDD	cd00167	1.56E-12	51	94	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-20	56	95	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MDRPRRFPTG VLCWTFWRSP MGFYSEGLNR TGKSCRLRWV NYLHPGLKRG KMTPQEERLV 60 LELHSKWGNR WSRIARKLPG RTDNEIKNYW RTHMRKEAQE KKHALSSSSA SSNISSSSSN 120 NPTVDSLTTR ETGKESFYGT GGPGDMLTST EKNIEEQGKS ESACSFDDIW KEIALADGYG 180 ILPIYDGYSE ESCNFSCPPM ASPTMEYNSD PLWLTDEEES KMFPVNQFIS NYGNGGAYIT 240 G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	9e-18	30	98	37	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-17	30	98	37	105	C-Myb DNA-Binding Domain
1msf_C	1e-17	30	98	37	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B02401.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043594.1	1e-158	PREDICTED: transcription factor MYB59
Swissprot	Q9LX82	2e-64	MYB48_ARATH; Transcription factor MYB48
TrEMBL	A0A059D554	1e-180	A0A059D554_EUCGR; Uncharacterized protein
STRING	XP_010043594.1	1e-158	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2502	27	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46130.3	2e-66	myb domain protein 48

Link Out ? help Back to Top
Phytozome	Eucgr.B02401.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nishida S,Kakei Y,Shimada Y,Fujiwara T Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana. Plant J., 2017. 91(4): p. 741-753 [PMID:28586097] Imran QM, et al. Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes. Sci Rep, 2018. 8(1): p. 771 [PMID:29335449]