PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02393.1.p
Common NameEUGRSUZ_B02393
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 328aa    MW: 35970.5 Da    PI: 10.1809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02393.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027198220123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC+ C++ Fs++  L  H  +H
  Eucgr.B02393.1.p 198 FKCKTCNREFSSSQALGGHRASH 220
                       89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.1E-4194222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.2E-7196269No hitNo description
SMARTSM003550.09198220IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-10198222IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.762198225IPR007087Zinc finger, C2H2
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
SMARTSM003551.3247269IPR015880Zinc finger, C2H2-like
PfamPF139123.1E-8247271IPR007087Zinc finger, C2H2
PROSITE patternPS000280249269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MNVSGAHETY ALFEIPVPCV SDVLGVTDRV ESVNDKCRRK AFRKVKASTA SLTCDDLPSF  60
HTRSHGILAL PLAAQAATFA LHLRAKLPRY HCPSYSFPKK LEGLFVTSVS KIRPHSTSHC  120
RTSHPDSAEQ AKEGNQKNQT LRFHILYYRL QEMVKRDRED AGVEALARAN CLMLLSQVGE  180
STNSSSPNHK SRPTERMFKC KTCNREFSSS QALGGHRASH KKPKLISGDL LHLGHAAYSS  240
PAKPKKHECS ICGLEFPIGQ ALGGHVRRHR AAMLESLAAV ATKPVPVLKK SNSKRVMGLD  300
LNSSPMEDDL TLRLGKVAPP LVLDLVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02393.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4801890.0KC480189.1 Eucalyptus grandis C2H2-type zinc finger protein 1 (ZFP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043584.11e-123PREDICTED: zinc finger protein ZAT11
TrEMBLA0A059D5B50.0A0A059D5B5_EUCGR; Uncharacterized protein
STRINGXP_010043584.11e-122(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.15e-38C2H2 family protein