PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02391.1.p
Common NameEUGRSUZ_B02391
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 222aa    MW: 24439.2 Da    PI: 10.136
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02391.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081141163123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  F+    L  H+r+H
  Eucgr.B02391.1.p 141 HECSICGLDFPMGQALGGHMRKH 163
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.77E-790163No hitNo description
SMARTSM003550.4692114IPR015880Zinc finger, C2H2-like
PfamPF139123.2E-1192117IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.42992119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
PfamPF139125.0E-11140165IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787141163IPR007087Zinc finger, C2H2
SMARTSM003550.27141163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MPDFPRDSRA FSSLQLSIIP PDSASKRRNQ KNQTPRFHIL YYRIPEMVKR DREDTEVEAL  60
ARANCLMLLS RVGESTDSAS PDRKSHPTER MFACKTCNRE FSSFQALGGH KASHKKQKLI  120
SGDLFHLGHA ADSSPAKPKT HECSICGLDF PMGQALGGHM RKHRAAMLES LAAAAAKPVL  180
VLKKSNSKRV TGLDLNSLPM EDDLTLRLGK VAPPLVLDLV L*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02391.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4801890.0KC480189.1 Eucalyptus grandis C2H2-type zinc finger protein 1 (ZFP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043583.11e-124PREDICTED: zinc finger protein ZAT8
SwissprotQ9LX851e-34ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A059D5V81e-161A0A059D5V8_EUCGR; Uncharacterized protein
STRINGXP_010043583.11e-124(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.13e-34C2H2 family protein