PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02349.1.p
Common NameEUGRSUZ_B02349
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 800aa    MW: 89790.2 Da    PI: 4.9164
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02349.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.71.9e-1134227961373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL  cA+a+s+gdl+ a++lL++++e++sp+gd  +Rla+yf+++L+arl+++ +++ +  ++  +++++++++l+a++l   ++P+ kf
  Eucgr.B02349.1.p 422 LRTLLSLCAQAISTGDLRTANELLKQIRENSSPSGDGSERLAHYFANGLEARLVGNKTRTQDFYSTIVARRTSVADVLKAYHLHISTCPFKKF 514
                       5789999************************************************999998888888888888******************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       s   aN +Il+ +e+++++HiiDf+i+ G+QWp L+q+L+sR+egp +lRiTg++ p++g   +e++eetg+rL+k++e+++vpfefn ++++
  Eucgr.B02349.1.p 515 SICFANYMILKLAEKATTLHIIDFGITFGFQWPILIQKLSSRSEGPCKLRITGIELPQTGfrPAERIEETGRRLKKYCERFNVPFEFNCIASR 607
                       ***********************************************************9*****************************9999 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       ++e+++le+L+++++E++aVn+  + ++llde+v+ +++rd+vL+l+++++P+++v++e   ++n++ Fl+rf eal   sal+d++++ l  
  Eucgr.B02349.1.p 608 HWESIKLEDLKIQSNETVAVNCLDRFKNLLDETVEDKNPRDAVLNLIRQMKPDIFVHSELSGSYNAPFFLTRFREALFQLSALYDMYDVILDG 700
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       +s+er + Ere+ grei+nv+aceg+er++r et+++W+ r ++aGFk++pl+++ +k  ++ ++ ++ + + ++e+ ++++lgW++r ++  
  Eucgr.B02349.1.p 701 DSKERLVFEREFHGREIMNVIACEGTERVARPETYKQWQVRHMRAGFKALPLDQELMKLFRSKMKACYHKDFGLNEDGNWMLLGWRGRIVYCS 793
                       ********************************************************************888********************** PP

              GRAS 371 SaW 373
                       S+W
  Eucgr.B02349.1.p 794 SCW 796
                       *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.365396777IPR005202Transcription factor GRAS
PfamPF035146.7E-111422796IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MAMEPLNFDY SDCINVDDLP VDSHGFSPDP DRYPSLTDAF FSDDPFLDLQ SSNSAFLSDK  60
VDPEYDPPSK SIDLDIGDLI FPSTSGSSGR GPFGPSVSSS SAPSPEGDSL SPSGDMDSPD  120
PVLKYINQML MEENMEEQPW EFADQVALLN AEKSLYDALR QQHSEVSDQS PSQLDLSDYI  180
ESPNSNLSGS SSAHGSHDAT SVTISSSDSA DANFLYTIKE HSRAGLENFD LDVQSSVDSS  240
SQLLSNSSSS TMNYDDGSEE SLHELLVKSI FSDSESMIQF KKGLEEASKF LPTNNQLGIN  300
LEDSKPPSQA KKGTSRMRIN EDINVKHSSD GFKGLKNHER DEDASEEGRA NKQTALYTEE  360
SELSDLFDKV LLCNENRGAM CSGNESVERG LSKDIRQQRN KRGSNRGRGR GKKQESKNTV  420
DLRTLLSLCA QAISTGDLRT ANELLKQIRE NSSPSGDGSE RLAHYFANGL EARLVGNKTR  480
TQDFYSTIVA RRTSVADVLK AYHLHISTCP FKKFSICFAN YMILKLAEKA TTLHIIDFGI  540
TFGFQWPILI QKLSSRSEGP CKLRITGIEL PQTGFRPAER IEETGRRLKK YCERFNVPFE  600
FNCIASRHWE SIKLEDLKIQ SNETVAVNCL DRFKNLLDET VEDKNPRDAV LNLIRQMKPD  660
IFVHSELSGS YNAPFFLTRF REALFQLSAL YDMYDVILDG DSKERLVFER EFHGREIMNV  720
IACEGTERVA RPETYKQWQV RHMRAGFKAL PLDQELMKLF RSKMKACYHK DFGLNEDGNW  780
MLLGWRGRIV YCSSCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-4342979825379Protein SCARECROW
5b3h_D9e-4342979825379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02349.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724299.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724300.10.0PREDICTED: scarecrow-like protein 34
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A059D4Z40.0A0A059D4Z4_EUCGR; Uncharacterized protein
STRINGXP_010046395.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]