PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02340.1.p
Common NameEUGRSUZ_B02340
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 475aa    MW: 54227.6 Da    PI: 8.606
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.92e-107984711373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPi 90 
                       l++lL+ cA+a+s++d++ a++lL++++e++sp gd+ qRla+yf+++L+arl++    ++  y+++ +++ts    ++ l++++l   ++P+
  Eucgr.B02340.1.p  98 LRTLLILCAQAISNNDFRTANELLKQIRENSSPFGDASQRLAHYFANGLEARLMGnnvRGEVFYSTVVARRTS---AADILKSYHLHISTCPF 187
                       5789*************************************************99433344566666666666...9**************** PP

              GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                        +fs + aN +Il+ +e+++++HiiDf+i  G+QWp+L+q+L+sRp+gp +lRiTg++ p++g    e++eetg+rL+k++e+++vpfefn++
  Eucgr.B02340.1.p 188 NQFSMFFANYMILKFAEKATTLHIIDFGIAFGFQWPNLIQKLSSRPGGPCKLRITGIELPQAGlrPVERIEETGRRLKKYCERFDVPFEFNFI 280
                       **************************************************************9*9***************************9 PP

              GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                       +++++e ++l +L+++++E++aVn+  + ++l d++v+ +++rd+vL l++++ P+++v++ +  ++n++ F +rf eal  +sa++d l+a+
  Eucgr.B02340.1.p 281 ASRNWEFIKLADLKIQSNETVAVNCLDRFKNL-DDTVEDNNPRDAVLYLIRKIIPDIFVHAVRSGSYNAAFFETRFREALFEFSAVYDLLDAT 372
                       999**********************9988777.7*********************************************************** PP

              GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                       + ++++er ++Ere+ grei+nv+aceg++r+e+ et+++W+ r  +aGFk++pl+++ +k  +  ++  + + + ++e+ ++++++W++r  
  Eucgr.B02340.1.p 373 IDHNNKERLVIEREFHGREIMNVIACEGSRRIEKPETYKQWQVRHVRAGFKALPLDQDFMKLFRGKMKAWYHKDFVLDEDGNWMLQCWRGRIS 465
                       ***********************************************************************888******************* PP

              GRAS 368 vsvSaW 373
                       +  S+W
  Eucgr.B02340.1.p 466 FGSSCW 471
                       ****** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.76472452IPR005202Transcription factor GRAS
PfamPF035146.8E-10598471IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MKSSSNGFKG LKNHERDENA FEEGRANKQT ALYTEESELS DLFDKVLLGT ENGVGMSSGN  60
EAAETGVRKD IQPQRNKHGS NSGSGCGKKQ GSKNTVDLRT LLILCAQAIS NNDFRTANEL  120
LKQIRENSSP FGDASQRLAH YFANGLEARL MGNNVRGEVF YSTVVARRTS AADILKSYHL  180
HISTCPFNQF SMFFANYMIL KFAEKATTLH IIDFGIAFGF QWPNLIQKLS SRPGGPCKLR  240
ITGIELPQAG LRPVERIEET GRRLKKYCER FDVPFEFNFI ASRNWEFIKL ADLKIQSNET  300
VAVNCLDRFK NLDDTVEDNN PRDAVLYLIR KIIPDIFVHA VRSGSYNAAF FETRFREALF  360
EFSAVYDLLD ATIDHNNKER LVIEREFHGR EIMNVIACEG SRRIEKPETY KQWQVRHVRA  420
GFKALPLDQD FMKLFRGKMK AWYHKDFVLD EDGNWMLQCW RGRISFGSSC WVPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-4910547326380Protein SCARECROW
5b3h_A5e-4910547325379Protein SCARECROW
5b3h_D5e-4910547325379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02340.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724295.10.0PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 34
SwissprotQ9XE581e-177SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A059D5Q90.0A0A059D5Q9_EUCGR; Uncharacterized protein
STRINGXP_010043534.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-175SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]