PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02335.1.p
Common NameEUGRSUZ_B02335
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 782aa    MW: 88551.3 Da    PI: 4.825
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02335.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.62e-1134047751373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+avs++d++ a  lL+++++ +sp+gd  qRla+yf+++L++rla+s ++  ++  +s  +    +++l+a++l   v+P++kf
  Eucgr.B02335.1.p 404 LRSLLVLCAQAVSASDFRTAPGLLKQIRHDSSPSGDGSQRLAHYFANGLETRLAGSIDTNQAQRFCSYRT---IADKLKAYHLHLSVCPFMKF 493
                       6899***************************************************666655555555554...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       + +  N +Il+ +++++ +HiiDf+i+ G+QWp L+q+L++R+egpp+lRiTg++ p++g   +e++eetg+rLa+++e+++vpfef+++++ 
  Eucgr.B02335.1.p 494 QIIFSNFMILKFAATAKVLHIIDFGINFGFQWPILIQELSKRTEGPPKLRITGIELPQPGfrPAEKIEETGRRLANYCERFNVPFEFQAVASG 586
                       ***********************************************************9*****************************8888 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       ++e++++e+L+++++E+++Vn+  +l++l+de+v+ + +rd+vL+l++s++P+v+v+   + ++n++ Fl+rf eal + sa+fd+l+a+++r
  Eucgr.B02335.1.p 587 SWECIRIEDLKIRSDETVVVNCLCRLEYLYDETVEENCQRDAVLRLIRSIEPDVFVHGIYNGSYNTPFFLNRFREALFHISAVFDMLDATVAR 679
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       ++e+r ++E+e+ g ei+ vvaceg +r+ r et+++W+ rl++aGFk++pl+++ +k+a++ l++++ + + ++e+s++++lgW++r + + 
  Eucgr.B02335.1.p 680 DNEQRLVLEKEFYGLEIMIVVACEGLHRIYRPETYRQWQVRLNRAGFKQLPLDHELMKKARAKLSECYHEDFGLDEQSNWMMLGWMGRMISAS 772
                       ********************************************************************999*********************9 PP

              GRAS 371 SaW 373
                        +W
  Eucgr.B02335.1.p 773 ACW 775
                       999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.576378756IPR005202Transcription factor GRAS
PfamPF035147.1E-111404775IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MTMESKFTEL TNPVNGFEAD SLAYPANPDP FPCLSDGFNV DELYVDFNSS GISSLPHEQQ  60
SANDKSIVQI ILDGGLNLPS TEVSPDGGSL HNSTSFSEIP NLREESLSLL DYTDSTDPVL  120
KYITQILMEE DVEEQPWIIP DFSALRQTEK SLYDTLGKKY PNSPEQTIEV NTNQFIDGTS  180
SNCNEDSSEQ GCTGTSHSLD PNSQDDPEGS LYHASLYAPN PHELVMQWTM DPSSHFYINS  240
TSSFPDYWNG FGDAFPSELL HRSTLSNSQP GLQLQFNKQF EEARKFLPVS VPVTMDQENY  300
DLAHKIGNTE VNGVDDEENL RNCLKNASRA RKNHHGDDAT FDEGRANKQS ALYKEDKEDC  360
ELSEMLDKVL LESTSEKTSG REDLPGPTCG RGRHKKRTKS TVDLRSLLVL CAQAVSASDF  420
RTAPGLLKQI RHDSSPSGDG SQRLAHYFAN GLETRLAGSI DTNQAQRFCS YRTIADKLKA  480
YHLHLSVCPF MKFQIIFSNF MILKFAATAK VLHIIDFGIN FGFQWPILIQ ELSKRTEGPP  540
KLRITGIELP QPGFRPAEKI EETGRRLANY CERFNVPFEF QAVASGSWEC IRIEDLKIRS  600
DETVVVNCLC RLEYLYDETV EENCQRDAVL RLIRSIEPDV FVHGIYNGSY NTPFFLNRFR  660
EALFHISAVF DMLDATVARD NEQRLVLEKE FYGLEIMIVV ACEGLHRIYR PETYRQWQVR  720
LNRAGFKQLP LDHELMKKAR AKLSECYHED FGLDEQSNWM MLGWMGRMIS ASACWCPHRL  780
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-434047335330GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02335.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043525.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_010043526.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_010043527.10.0PREDICTED: scarecrow-like protein 34
TrEMBLA0A059D5600.0A0A059D560_EUCGR; Uncharacterized protein
STRINGXP_010043524.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3436622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14