PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B02329.1.p
Common NameEUGRSUZ_B02329
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 764aa    MW: 86180.1 Da    PI: 6.4334
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B02329.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.92.2e-1113877601373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+avs++d++ a  lL ++++ +sp+g+  qR+a+yf+ AL+arla+ + + ++a+  s  ++++++++l+a++l + ++P++kf
  Eucgr.B02329.1.p 387 LRSLLILCAQAVSTNDFKTACGLLRQIRQDSSPSGNGSQRVAHYFADALEARLAG-SAGRSQAFYYSVIQKRSVADKLKAYHLEYSACPFPKF 478
                       6899***************************************************.66677778777777789******************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       + l  N +Il+++e+++ +HiiDf+i++G+QWp L+q+L++R++g p+lRiTg++ p++g   +e++e+tg+rLak++++++vpfef+++++ 
  Eucgr.B02329.1.p 479 QILFSNYMILKSAETAKVLHIIDFGINYGFQWPILIQELSKRTGGVPKLRITGIELPQPGfrPSEKIEQTGHRLAKYCKRFNVPFEFQAVASA 571
                       ***********************************************************9*****************************9999 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       ++e++e+ +L+++++E++aVn+  + ++l+de+v+++ +rd vL+l+ s++P+++++  ++ ++n + F +rf eal   sa++d +++++ +
  Eucgr.B02329.1.p 572 SWECIEVADLKIQSDEVVAVNCLARFENLYDETVEINCQRDMVLNLIGSIKPQIFIHGIRNGSYNMPFFITRFREALFQLSAIYDVFDTTVVH 664
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       ++ +r ++E+ ++gre++n+vaceg er+er et+++W+ rl+++GF+++pl+++  k+a++ l+  + + +++eee+++++lgW++r +  +
  Eucgr.B02329.1.p 665 NNVQRFVLEKDVFGREVMNIVACEGMERVERPETYKQWQLRLTRVGFQQLPLDQELIKKARAKLSGNYHKDFKLEEENNWMLLGWRGRIISCC 757
                       ********************************************************************888********************** PP

              GRAS 371 SaW 373
                       ++W
  Eucgr.B02329.1.p 758 TCW 760
                       *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.032361741IPR005202Transcription factor GRAS
PfamPF035147.6E-109387760IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MEFNLPEFSS SVDGFEDNSL THPAISYHSR NLCNAVKIDE PPVVSNSAEM TSLPHQPEPM  60
YYATSVPINL DADLNLPSRD TRPNLEMLRH STSSSESANI RGDSLSLSDH SNSMDPVLKY  120
VNQILMEEKM EQQPWVVPNI VALRHTEKSL YDALGKKYPD SPEQTKVVDT NQVSNSSCWN  180
PWGRSDRGSN STAITSSNSC RPLDPNSHDD PEGNNYSFIH AKSPGNVVLQ SNVDYKFHEV  240
LISPIFNNNE SVVQFNKGLE EARKFIPRGF HITIGQEKDG LAPTIRDKEE IGIKGSHQSE  300
NGSRGRKNHE SHYARSEEGP ANKQLASYNE DPELSDLLEK LLLSNKNGGL LSLECKSEKL  360
SEIKDPQDPN GTGDQSNKNR NDSTLDLRSL LILCAQAVST NDFKTACGLL RQIRQDSSPS  420
GNGSQRVAHY FADALEARLA GSAGRSQAFY YSVIQKRSVA DKLKAYHLEY SACPFPKFQI  480
LFSNYMILKS AETAKVLHII DFGINYGFQW PILIQELSKR TGGVPKLRIT GIELPQPGFR  540
PSEKIEQTGH RLAKYCKRFN VPFEFQAVAS ASWECIEVAD LKIQSDEVVA VNCLARFENL  600
YDETVEINCQ RDMVLNLIGS IKPQIFIHGI RNGSYNMPFF ITRFREALFQ LSAIYDVFDT  660
TVVHNNVQRF VLEKDVFGRE VMNIVACEGM ERVERPETYK QWQLRLTRVG FQQLPLDQEL  720
IKKARAKLSG NYHKDFKLEE ENNWMLLGWR GRIISCCTCW LSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-443917608374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B02329.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043520.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724289.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724290.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724291.10.0PREDICTED: scarecrow-like protein 34
TrEMBLA0A059D4N00.0A0A059D4N0_EUCGR; Uncharacterized protein
STRINGXP_010043520.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3464322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-177SCARECROW-like 14