PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01795.1.p
Common NameEUGRSUZ_B01795, LOC104431204
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 151aa    MW: 16199.2 Da    PI: 8.472
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01795.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.3e-085880527
                      --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                       C++f  tG+C+yGd+Ck+ H++
  Eucgr.B01795.1.p 58 VCNRFVNTGFCQYGDSCKYFHPK 80
                      6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.0012338IPR003604Zinc finger, U1-type
SuperFamilySSF576679.13E-15453No hitNo description
PfamPF062205.7E-10536IPR013085Zinc finger, U1-C type
PROSITE profilePS5010313.2255381IPR000571Zinc finger, CCCH-type
SMARTSM003560.00665580IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-75680IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-65879IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-65880IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTPG ARKRHLQGLS HLRAKALWFD SLHHEPNQAY AEGYVRGVCN  60
RFVNTGFCQY GDSCKYFHPK SVSSPAPRTA GGNAQSTVIP GSHLVGGTSL QGNVVVADGT  120
GTATAWGNLP PSLKPPPEGG YPSLPFIDWG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01795.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010042181.11e-109PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ0JP112e-46C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A059D3K21e-108A0A059D3K2_EUCGR; Uncharacterized protein
STRINGXP_010042181.11e-109(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.14e-49C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]