PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.B01751.1.p

Common Name

EUGRSUZ_B01751

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 515aa MW: 58600.6 Da PI: 6.7105

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.B01751.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.9	5.6e-07	4	37	56	90
FAR1 56 aetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + tr C+ak++ k e gkw+++k++leH+H la Eucgr.B01751.1.p 4 QGTRKTCEAKIRCKVE-GGKWRISKVVLEHSHGLA 37 56899********9.*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-4	4	36	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.1E-16	137	228	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.619	393	429	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0064	404	431	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MPTQGTRKTC EAKIRCKVEG GKWRISKVVL EHSHGLAGHF AGDQEAVEDS PAARAPSTGE 60 YEAEPTLISN VGCSGVSRGT GRNPSMAQDL IDSFKSMQTE DSHFFYTVQL EAAQGMANFF 120 WRDGQSMVDY EHFGDVLILD TRTTINIYNM ICAAFWGLNH HRQRIIFGYA FLVDQGVDSF 180 KWLLQSFLGA MRGKKPETII TEVSEEIAEA LKVVLPGTFH RLPYWSILNS DRTDVNDLLS 240 ECIFNWNALL ARCNPHEKKQ FTSLYEMRKK WSLPFTKIVF SAGLLSIQNN EDSCPVFENL 300 SWETSLPQIA HRCKMVAKHL RSREFEEDEF CETTAAVDLE SRSPMEKQAK CLYTRPIFEM 360 FQKELINSLS LAIRVSNDRE TFELTEQDSK KIATVKVNRT DLTLACSCGK FKSVGILCFH 420 VLKVYNYFNI FEIPSCYLSK RWMKSAKDRL PIDTPSANTV QDSGASSRRE YMREALHVSH 480 GHGFKKRERI PLRAWRMEET EGHSEGIDDD AVEP*

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MPTQGTRKTC EAKIRCKVEG GKWRISKVVL EHSHGLAGHF AGDQEAVEDS PAARAPSTGE  60
YEAEPTLISN VGCSGVSRGT GRNPSMAQDL IDSFKSMQTE DSHFFYTVQL EAAQGMANFF  120
WRDGQSMVDY EHFGDVLILD TRTTINIYNM ICAAFWGLNH HRQRIIFGYA FLVDQGVDSF  180
KWLLQSFLGA MRGKKPETII TEVSEEIAEA LKVVLPGTFH RLPYWSILNS DRTDVNDLLS  240
ECIFNWNALL ARCNPHEKKQ FTSLYEMRKK WSLPFTKIVF SAGLLSIQNN EDSCPVFENL  300
SWETSLPQIA HRCKMVAKHL RSREFEEDEF CETTAAVDLE SRSPMEKQAK CLYTRPIFEM  360
FQKELINSLS LAIRVSNDRE TFELTEQDSK KIATVKVNRT DLTLACSCGK FKSVGILCFH  420
VLKVYNYFNI FEIPSCYLSK RWMKSAKDRL PIDTPSANTV QDSGASSRRE YMREALHVSH  480
GHGFKKRERI PLRAWRMEET EGHSEGIDDD AVEP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.B01751.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010041909.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_010041915.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
TrEMBL	A0A059D432	0.0	A0A059D432_EUCGR; Uncharacterized protein
STRING	XP_010041909.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-66	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Eucgr.B01751.1.p