PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01570.1.p
Common NameEUGRSUZ_B01570, LOC104428216
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 972aa    MW: 109425 Da    PI: 5.2891
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01570.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.7e-14853248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Eucgr.B01570.1.p  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                      78*****************************.************986 PP
2Myb_DNA-binding32.81.6e-1060103248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Eucgr.B01570.1.p  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                       68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139214.7E-131070No hitNo description
CDDcd001671.02E-111053No hitNo description
SuperFamilySSF466897.19E-2133107IPR009057Homeodomain-like
CDDcd116591.65E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.4E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118315.7E-53406663IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 972 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDNRHR KRKRKGIDYN AEIPFEKRPP PGFFDVADED RPVEQPKFPT  240
TIEELEGKRR VDVEAQLRKQ DMAKNKIAQR QDAPSAILQA NRLNDPETVR KRSKLMLPAP  300
QISDHELEEI AKMGYASDLV GNEELMGGTS ATHALLANHA QTPHQGMTPL RTPQRTPAGK  360
GDAIMMEAEN LARLRESQTP LLGGENPDLH PSDFSGVTPR KKEIQTPNPM MTPSMTPGGG  420
STPGGGSTPG GGSTPRLGMT PSRENLSFGM TPKGTPIRDE LHINEEMDMN EGAKQELRRQ  480
ADLRKNLRSG LSNLPQPKNE YQIVMQPVPE DNEEPEEKIE EDMSDRIARE KAEEEARQLA  540
LLRKRSKVLQ RELPRPPAAS LQLIKDSLLR TEGDKSSFVP PTLIELADEM IRKELLSLLE  600
HDNAKYPLQD NTTKGKKKAK NSANGSTVPV IEDIEEDDMK EADSMIKEEA QYLRVAMGHE  660
SEAFEEFVDA HKTCLNDLMF FPTRNAYGLS SVAANAEKLA ALQNEYHFAK ARIDEDHEKA  720
QRLEKKVKTL TFGYQMREKT LRDQIESTFK QLDTAGTELE CFRALQKQEQ LAASHRINSL  780
WEEVQKQKEL ERTLQMRYGA LVAELERGRH LFDCYRAEEQ KQEEIAASNQ ALEVDNAATD  840
EAVSSNQTEE IEHPMDSHQL FDGNVGQESH AAENAHADDI NVSTAASSVG AVDMEDEKPH  900
EVSVGTELIF ESTEQVVVDS TKSREKLDVE DRDPAMEMRN SDGPSTEQIE HGSATPPQIE  960
HGSATPPHAS E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028123802Cell division cycle 5-like protein
5xjc_L0.028123802Cell division cycle 5-like protein
5yzg_L0.028123802Cell division cycle 5-like protein
5z56_L0.028123802Cell division cycle 5-like protein
5z57_L0.028123802Cell division cycle 5-like protein
5z58_L0.028123802Cell division cycle 5-like protein
6ff4_L0.028123802Cell division cycle 5-like protein
6ff7_L0.028123802Cell division cycle 5-like protein
6icz_L0.028123802Cell division cycle 5-like protein
6id0_L0.028123802Cell division cycle 5-like protein
6id1_L0.028123802Cell division cycle 5-like protein
6qdv_O0.028123802Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDNRHRKRKRK
2199204RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01570.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039513.10.0PREDICTED: cell division cycle 5-like protein isoform X1
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A059D2P70.0A0A059D2P7_EUCGR; Uncharacterized protein
STRINGXP_010039513.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64532742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]