PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01487.1.p
Common NameEUGRSUZ_B01487, LOC104427410
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 345aa    MW: 35756.1 Da    PI: 6.5911
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01487.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-10193237554
                       HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       h+++Er RR+ri +++ +L++l+P+ +      K + a++L + v+Y+k L
  Eucgr.B01487.1.p 193 HSIAERLRRERIAERIRQLQDLVPSvN------KTDRAAMLDEIVDYVKFL 237
                       99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-15186248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.215188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-15190248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7193237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-11194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MANNPSDGAS DEFLEHLLGL PNFAAAAEAG LAPGDGTGLS VTAATPMMLQ LGSGDGSGGH  60
GHGHGHGQGH LSALGGGGAG AGGGGGGGGG GYHGAVFPLG LSLEQGKGGF LKPEEASGSG  120
KRYPEEVVDG RASTVKNLHS PLPNFPDVSQ MASFRNRDVF HGQPVPNPVP AAPHPPAMRP  180
RVRARRGQAT DPHSIAERLR RERIAERIRQ LQDLVPSVNK TDRAAMLDEI VDYVKFLRLQ  240
VKVLSMSRLG AAGAVAPLVT DIPLSSVEEE GGEGGRNQPA WEKWSNDGTE RQVAKLMEEN  300
VGAAMQFLQS KALCIMPISL ATAIYQTQPP DTSSLVKSES NPPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01487.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038809.10.0PREDICTED: transcription factor UNE12 isoform X1
SwissprotO227681e-125UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A059D2F90.0A0A059D2F9_EUCGR; Uncharacterized protein
STRINGXP_010038809.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.35e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]