PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B01259.1.p
Common NameEUGRSUZ_B01259
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 620aa    MW: 71339.2 Da    PI: 8.5342
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B01259.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.13.2e-091685390
              FAR1  3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                      Y +YA   GF vrksk++k+ ++geit+r f+                ++++r e r+gC a +k k e +g+ ev + ++eHnHe+ 
  Eucgr.B01259.1.p 16 YVAYAIGKGFGVRKSKTRKN-DKGEITRRIFK----------------KKNERLEVRCGCPAFIKFKVE-NGVHEVVEYVSEHNHEFI 85
                      999**********9999998.77779998883................2356889*************9.***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-54685IPR004330FAR1 DNA binding domain
PfamPF105511.5E-33207301IPR018289MULE transposase domain
PROSITE profilePS509668.061492523IPR007527Zinc finger, SWIM-type
PfamPF044340.0014497521IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MIGMIFASEL EAYNKYVAYA IGKGFGVRKS KTRKNDKGEI TRRIFKKKNE RLEVRCGCPA  60
FIKFKVENGV HEVVEYVSEH NHEFIPEHQR QLIRCGRTIS NTCKGVLVDM AKAGIGGTMA  120
YKFLANEAGG SQNLGLILRD CQNFLQSERS NLIEGGDCQN LLNHFHSMQM QNPMFFYAQQ  180
VDQEGRLTNL FWRDSLSKFD YDCFGDVVVF DTTYRTNKYN LICGPFVGVN HHWKNTLFGC  240
AFLSDETAIS FIWLFEVFLK SMGNKAPKTI FTDQDQAIAK AIRTVFPNTQ HRLCTWHIGK  300
NANQNIGHLY NKPEFKDKYF SKLMYRCRSE DEFDSTWRKM DEEWGTENNS WLQRLYDLRY  360
KWSSAFGRDI FTCGITSSQR SESTNNVFQK MAAKTSSLVL FVHYYEEQLK HMRETKGQDD  420
YSSRGQPTLH VMHNGILKHA ASVYTRAIFK RFYDEFLQIV SQHISSTTFD GLVYEYTLTC  480
KEIQGEHIVK FNHVDFSISC ECKLFESKGW LCCHALHVLN ANPSISVIPS AYILKRWTKG  540
AKQGYMNDES HEMSAGQSTS NRFSTLMQNA FEVMSLGAQD ENTMRIAKKN LNATMQPSYI  600
MPPGIMNECN NHISCRKGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B01259.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056981.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A059D1140.0A0A059D114_EUCGR; Uncharacterized protein
STRINGXP_010056981.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-103FAR1-related sequence 5