PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00631.1.p
Common NameEUGRSUZ_B00631
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 525aa    MW: 57179.5 Da    PI: 8.5461
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00631.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.38.1e-42155230277
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q
  Eucgr.B00631.1.p 155 CQVYGCNKDLSSSKDYHKRHKVCEAHSKTSKVIVNGKEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 230
                       **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-33151216IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.282152229IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-38153232IPR004333Transcription factor, SBP-box
PfamPF031106.9E-32155228IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSSSDALARS KNAFLGWELR TPSGFSNNGM LVSAQQANHS ISPGFGELGF QDMTKQVPRD  60
PIRDVWCHKA GGGRDINSIM TSPISFLSDE ESSKFTSFVM DSTSRDSSLF DLKLGRFSDN  120
RDTPKSRLPV LSSSDSSTPL KRARPAGANF QNAYCQVYGC NKDLSSSKDY HKRHKVCEAH  180
SKTSKVIVNG KEQRFCQQCS RFHLLAEFDD GKRSCRKRLA GHNERRRKPQ NGIHPAKAGK  240
LLPPYCGNRF QGNVFTTASF ICQDILPSGG HLHPEKFKAN DWGNRVKAEH GTDYGTLSVV  300
HPRSPFPSYG FGKQLSPFLD NRGNSASVGI FGEASRFQHE GQNSGSRSLF PDPLGSEDYG  360
IFDTESTVQG LPGVSESRRA LSLLSSHSQN SSSQTSGIPM DQSLIMHGGQ SRYGVGPVSE  420
NLMGLSSLAL ENGGSSKFPS SGIHSAEANQ GPILICDNEN SNYAISGGFG SGLLDAKDHF  480
HCGDNEPTIN LLQLSSQLQR VEHQRQSSMH VKQENNAFSC LQTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-281552281184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00631.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031056.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A059D0K30.0A0A059D0K3_EUCGR; Uncharacterized protein
STRINGXP_010031056.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14770918
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.13e-48SBP family protein