PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00587.1.p
Common NameEUGRSUZ_B00587, LOC104420505
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 609aa    MW: 69823.6 Da    PI: 4.8398
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00587.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00087578596220
                       EETTTTEEESSHHHHHHHH CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                       +C+ Cg+ F ++  L +H+
  Eucgr.B00587.1.p 578 SCETCGQEFESRTKLFKHL 596
                       6*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.57E-243107IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.7E-24475IPR001623DnaJ domain
SMARTSM002718.5E-23668IPR001623DnaJ domain
PROSITE profilePS5007619.901776IPR001623DnaJ domain
CDDcd062571.17E-18765IPR001623DnaJ domain
PfamPF002261.3E-21873IPR001623DnaJ domain
PRINTSPR006252.2E-15927IPR001623DnaJ domain
PRINTSPR006252.2E-152742IPR001623DnaJ domain
PRINTSPR006252.2E-154868IPR001623DnaJ domain
PROSITE patternPS0063605372IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.69E-14288341No hitNo description
SMARTSM004513.0E-4296330IPR003604Zinc finger, U1-type
PROSITE profilePS501578.621299328IPR007087Zinc finger, C2H2
SMARTSM003551.9299323IPR015880Zinc finger, C2H2-like
PfamPF121715.0E-11299324IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280301323IPR007087Zinc finger, C2H2
SMARTSM003555.4577601IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349577606IPR007087Zinc finger, C2H2
PROSITE patternPS000280579601IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MAAEKRCHYE VLGLSRDCTA EEIRSAYRKL ALQRHPDKLV QSGLSPEDAT AQFQELAHAY  60
EVLSDPKERA WYDSHRSQIL FSDRSSGAAA NSPVPNLFSY FSNTVFSGFS DSGKGFYKVY  120
AEVFDKIYAN EISFASKMGL GLDSVREAPL MGNLESPYAQ VTAFYNYWLG FCTVMDFMWV  180
DMYDAAAGVN RKSRRVMEEE NKKLRKKARR EFNETVRGLA EFVKKRDKRV VDMMVKRNME  240
NEKRREEERE RKKQLERERM ERAKAYEEPE WARVEEEEGE EGGSSGEEED GERKEEKELY  300
CVACGKKFKS EKQWENHEKS KKHKEKVAAL KESFVEEDEE EEEEENEDAE VTGVEEDGAE  360
EIGERMRDGL EVKEEEKEQI EDRGEMNDGE RFFDVDESNK EEGTKEMEGP SHKDDDHDDD  420
DDKLNEMSVL EAMLSGRKNR RKMAAMQELR ASSKVDTQNG EEEFMEYDNR KSTRRNRGAK  480
KERFRKNNGE DADTGNSKDN DQSERTNGDD GTVADGSASD FPRKDDSEAI GGNEVAKDKT  540
LNQSSDRKRT GKKDPITKSN NAPKGRKAKA SAKNADNSCE TCGQEFESRT KLFKHLGETG  600
HASLKYRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201209KKLRKKARR
2437442KNRRKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00587.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030640.10.0PREDICTED: DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A059CYY90.0A0A059CYY9_EUCGR; Uncharacterized protein
STRINGXP_010030640.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-128DNAJ heat shock N-terminal domain-containing protein