PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00529.1.p
Common NameEUGRSUZ_B00529, LOC104419958
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 362aa    MW: 40747.9 Da    PI: 7.6531
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00529.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM184.42.8e-57161421129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+++yL+kkv ++ +++ ++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke++
  Eucgr.B00529.1.p  16 LPPGFRFHPTDEELITHYLQKKVGDTGFSA-KAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCLRDRKYPTGLRTNRATESGYWKATGKDKEIY 107
                       79**************************99.89***************888999*************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       + +++lvg+kktLvfy+grapkgekt+Wvmheyrle
  Eucgr.B00529.1.p 108 R-GKSLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 142
                       *.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6412166IPR003441NAC domain
PROSITE profilePS5100560.23316166IPR003441NAC domain
PfamPF023657.5E-3017141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MENMARLGKE DDQIELPPGF RFHPTDEELI THYLQKKVGD TGFSAKAIGE VDLNKSEPWD  60
LPWKAKMGEK EWYFFCLRDR KYPTGLRTNR ATESGYWKAT GKDKEIYRGK SLVGMKKTLV  120
FYRGRAPKGE KTNWVMHEYR LEGKLSLNYL PRASKNEWVI CRVFQKSSGG KKIHISSLVA  180
AGSLENEMSS GLPPLTDSSP HDSKTESNPG SAYVPCFSSP TEFERNKENT NNYFNNPMFP  240
ISSNPTNTTP KISLLSPVYP HQAIPVPANW QHPGGSVFMP EHSVLRALLE GTGLNARQSA  300
RAEREAISIS QETALTNDLN TEISSVMQDF EMGRRQFEDQ QQVPSTLAGP MDVDLLWNYS  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-561317217174NAC domain-containing protein 19
3swm_B9e-561317217174NAC domain-containing protein 19
3swm_C9e-561317217174NAC domain-containing protein 19
3swm_D9e-561317217174NAC domain-containing protein 19
3swp_A9e-561317217174NAC domain-containing protein 19
3swp_B9e-561317217174NAC domain-containing protein 19
3swp_C9e-561317217174NAC domain-containing protein 19
3swp_D9e-561317217174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00529.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030103.10.0PREDICTED: NAC domain-containing protein 100
SwissprotQ9FLJ21e-153NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A059CYR80.0A0A059CYR8_EUCGR; Uncharacterized protein
STRINGXP_010030103.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-146NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]