PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B00377.1.p
Common NameEUGRSUZ_B00377, LOC104418706
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 288aa    MW: 30264 Da    PI: 9.4162
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B00377.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.5e-1393137347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT++E+ l++ + ++ G+g+W+ I++ + k+Rt+ q+ s+ qky
  Eucgr.B00377.1.p  93 PWTEDEHRLFLLGLQKVGKGDWRGISKNFVKTRTPTQVASHAQKY 137
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.09686142IPR017930Myb domain
SuperFamilySSF466898.58E-1788143IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-1789140IPR006447Myb domain, plants
SMARTSM007175.2E-1090140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-1192137IPR009057Homeodomain-like
CDDcd001673.47E-993138No hitNo description
PfamPF002497.2E-1193137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSSDARAASG ATAAGAGEFM LFGVRVVVVD PMRKSVSLNN LSEYEQPQDA APGGGGVGKD  60
DAGAAASGYA SADEAVAHGS KGGAGRERKR GVPWTEDEHR LFLLGLQKVG KGDWRGISKN  120
FVKTRTPTQV ASHAQKYFLR RSNLNRRRRR TSLFDITTDT VTAGTMMEEQ APPVDVATES  180
YPAPPTPTVP LESSNISGFS MMPPTVHVVL PVPAENPVEN LSFGPGGQFD NSPAKLVRPV  240
PILPAPHAPA VNLSLASPSD QSEPSRRPSA FQMTPSFGKG DSMISVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150RRRRRT
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00149DAPTransfer from AT1G19000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B00377.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028425.10.0PREDICTED: transcription factor MYB1R1
SwissprotQ2V9B02e-59MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A059CYC70.0A0A059CYC7_EUCGR; Uncharacterized protein
STRINGXP_010028425.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19000.27e-51MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]