PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

TALE

Protein Properties

Length: 704aa MW: 75387.1 Da PI: 8.3834

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.A02588.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.6e-09	391	428	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Eucgr.A02588.2.p 391 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 428 664459******************************88 PP
2	BELL	123.7	7.5e-40	255	326	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY+qy++q+q+vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdaia+qi Eucgr.A02588.2.p 255 ERQEIQMKKAKLINMLDEVEQRYRQYHNQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQI 326 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.2E-63	184	324	IPR006563	POX domain
Pfam	PF07526	6.3E-49	189	323	IPR006563	POX domain
PROSITE profile	PS50071	12.228	369	432	IPR001356	Homeobox domain
SMART	SM00389	2.2E-9	372	436	IPR001356	Homeobox domain
CDD	cd00086	1.04E-12	372	433	No hit	No description
SuperFamily	SSF46689	4.71E-17	373	439	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-28	375	438	IPR009057	Homeodomain-like
Pfam	PF05920	4.8E-18	389	428	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009610	Biological Process	response to symbiotic fungus
GO:0009737	Biological Process	response to abscisic acid
GO:0010197	Biological Process	polar nucleus fusion
GO:0010201	Biological Process	response to continuous far red light stimulus by the high-irradiance response system
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence Send to blast
MATYYHQSSS DPDGALQTLV LMNPASYVHY SDAPPPHQQP SAIFLNSSTA GPPASQTQQF 60 VGIPLPGSAA DSQPSSMHVN HDLSSMHGFM PRVQYNLWSS LDPSTAAREA SRTHQQQGLS 120 LSLSPQQPPP TPAGYRSFVR AERSGDGAAG SQHPPAISGG EDVRISGGSP SSASGVTNGA 180 AVGSGMQGVL LSSKYLKAAQ ELLEEVVNVG NTGIKAEMLK KASGQSKPGG ESAALKEEGG 240 GDGSGKRGAE LSMAERQEIQ MKKAKLINML DEVEQRYRQY HNQMQIVISS FEQAAGIGSA 300 RTYTALALQT ISKQFRCLKD AIAGQIRAAN KSLGEEDGPG GKIEGSRLKF VDHHLRQQRA 360 LQQLGMIQQN AWRPQRGLPE RSVSILRAWL FEHFLHPYPK DSDKVMLAKQ TGLTRSQVSN 420 WFINARVRLW KPMVEEMYTE EIKEQEQNGG GAEEKPSKSE REDSASKSSG LQDKAPNSNE 480 NSTKSFKPKE ITSRNHDTPA ISTNSASSIG GNVRSSSSGF TLVGPSELEG LTQGSPKKPR 540 SAELLQNLSN VSSLNVNPKL GEAISMKFID EGQGRDGYPI IGGGPANFIG GFGQYPMGEI 600 GRFGADQFAP SFSGNGVSPT FSGNGVSLTL GLPHSENLSL SGAHQSFLPS QNIQLGRRVD 660 IGEANEFGAM NTPTIPHSSS AYETMNIQNR KRFPVQLLQD FVA*

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence Send to blast

MATYYHQSSS DPDGALQTLV LMNPASYVHY SDAPPPHQQP SAIFLNSSTA GPPASQTQQF  60
VGIPLPGSAA DSQPSSMHVN HDLSSMHGFM PRVQYNLWSS LDPSTAAREA SRTHQQQGLS  120
LSLSPQQPPP TPAGYRSFVR AERSGDGAAG SQHPPAISGG EDVRISGGSP SSASGVTNGA  180
AVGSGMQGVL LSSKYLKAAQ ELLEEVVNVG NTGIKAEMLK KASGQSKPGG ESAALKEEGG  240
GDGSGKRGAE LSMAERQEIQ MKKAKLINML DEVEQRYRQY HNQMQIVISS FEQAAGIGSA  300
RTYTALALQT ISKQFRCLKD AIAGQIRAAN KSLGEEDGPG GKIEGSRLKF VDHHLRQQRA  360
LQQLGMIQQN AWRPQRGLPE RSVSILRAWL FEHFLHPYPK DSDKVMLAKQ TGLTRSQVSN  420
WFINARVRLW KPMVEEMYTE EIKEQEQNGG GAEEKPSKSE REDSASKSSG LQDKAPNSNE  480
NSTKSFKPKE ITSRNHDTPA ISTNSASSIG GNVRSSSSGF TLVGPSELEG LTQGSPKKPR  540
SAELLQNLSN VSSLNVNPKL GEAISMKFID EGQGRDGYPI IGGGPANFIG GFGQYPMGEI  600
GRFGADQFAP SFSGNGVSPT FSGNGVSLTL GLPHSENLSL SGAHQSFLPS QNIQLGRRVD  660
IGEANEFGAM NTPTIPHSSS AYETMNIQNR KRFPVQLLQD FVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-16	378	435	1	58	Homeobox protein Meis1
4xrs_B	2e-16	378	435	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.A02588.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010059079.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A059DJ99	0.0	A0A059DJ99_EUCGR; Uncharacterized protein
STRING	XP_010059079.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-162	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	Eucgr.A02588.2.p
Entrez Gene	104446987

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]