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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A02043.3.p | ||||||||
Common Name | EUGRSUZ_A02043 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 534aa MW: 58385.3 Da PI: 6.9826 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.5 | 8.5e-17 | 341 | 387 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Eucgr.A02043.3.p 341 VHNLSERRRRDRINKKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 387 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-20 | 335 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.222 | 337 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.07E-17 | 340 | 391 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-20 | 341 | 395 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-14 | 341 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-18 | 343 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0009693 | Biological Process | ethylene biosynthetic process | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MNPCLPDWNF EYDLPLTNQK KNIGSDQELV ELLWQNGQVV MHSQNHRKPS SNQHESSQLP 60 KQDQPIMKGS GSYGNSSNLI QDDETVSWIH YPVEDSFERE FCSNFFDELP VPHPMEIDKA 120 VRQVEAEKIV KSASFNDAHN TSNQQSTVKR ALVPEISGNQ MPPPRAQFAK SAQQNNVTGN 180 LGKVVNFSQF ASPVKGDPRP SSLHFGGDAR ECSVMTVGSS HCGSNQIVND PDFSRASSNA 240 AGTAGFSAGT FKEDVHKNVV SQSEGRKTET LEPTVTSSSG GSDSSFGGTL KESAGASSHK 300 RKGRDNEESE CQSEAAEPEV AGGKKPATRS GSTRRSRAAE VHNLSERRRR DRINKKMKAL 360 QELIPHCNKT DKASMLDEAI EYLKSLQLQL QVMWMGGGMA PMMFPGVQHY MSSMGMTMCP 420 PPMPTVSNNL HLPQVPVVDQ SIPMAPNPNQ SAICHTPVLN PMNFQNQMQS PSFPEQFARY 480 MGMHHMQATS QPMNMFKFGP QTVQQIQTNP LPGSISGQYS GGATNDALSG KMG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 345 | 350 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00082 | ChIP-seq | Transfer from AT3G59060 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A02043.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010054152.1 | 0.0 | PREDICTED: transcription factor PIF5 | ||||
TrEMBL | A0A059DGA5 | 0.0 | A0A059DGA5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010054152.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43010.2 | 2e-32 | phytochrome interacting factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A02043.3.p |