PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01948.1.p
Common NameEUGRSUZ_A01948, LOC104441506
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 439aa    MW: 49802.5 Da    PI: 5.0045
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01948.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.3e-35141042101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+ye+++d++++ l+swseng+sfvv+ + ef+ ++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF++++F +g+k+ll
  Eucgr.A01948.1.p  14 FLVKTYEMVDDPQTDFLVSWSENGSSFVVWSPPEFSGELLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGEKHLL 97 
                       9****************************************************************999.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i r+k
  Eucgr.A01948.1.p  98 NNIYRRK 104
                       *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-38597IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.16E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.5E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:3.30.830.109.6E-4137246IPR011237Peptidase M16 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDGSQGKSNA PAPFLVKTYE MVDDPQTDFL VSWSENGSSF VVWSPPEFSG ELLPKYFKHN  60
NFSSFVRQLN TYGFRKIDPD QWEFANEEFI RGEKHLLNNI YRRKPIHSHS GQGARLSDSE  120
KQMYEEEIKR LRHEKSSLQS ELQRYQGDNQ DVDFQIQLLR KQFQNMEQKQ THLITVLAQL  180
MQKPVFASLF TQQSDSPTKK RRLAELDHLH DSDDKSGLES LKFQKEKFNG VPFSLLDLDS  240
VEKLEQSLHF LENLLQGVDN TSGAEQHDFG AISLPWPAGF TERKESLDDS DRHIRPWSPG  300
SPPSPKDVAL SPELALGTDH LESPETSSVC LNMDISLKSS VIDVNMEPVC VPDVENLKEQ  360
ILEKMPGAPT AVNDVFWEQF LTEAPCASDS QEVESERREG SGSRSPMKLA NRGKFWWNSH  420
LGNDFTKHVG SLASEGRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-26310319129Heat shock factor protein 1
5d5v_B1e-26310319129Heat shock factor protein 1
5d5v_D1e-26310319129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01948.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052968.10.0PREDICTED: heat stress transcription factor A-4b
TrEMBLA0A059DHG50.0A0A059DHG5_EUCGR; Uncharacterized protein
STRINGXP_010052968.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.15e-72HSF family protein