PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.A01622.1.p | ||||||||
Common Name | EUGRSUZ_A01622, LOC104439048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 297aa MW: 31854.4 Da PI: 6.9779 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 120 | 142 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+sF++ L H +H Eucgr.A01622.1.p 120 FSCKTCGRSFPSFQALGGHRASH 142 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00018 | 203 | 225 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Eucgr.A01622.1.p 203 HECSICGAEFSSGQALGGHMRRH 225 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.616 | 120 | 147 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.71E-9 | 120 | 142 | No hit | No description |
SMART | SM00355 | 0.1 | 120 | 142 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.3E-11 | 120 | 144 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 122 | 142 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.71E-9 | 198 | 225 | No hit | No description |
Pfam | PF13912 | 3.9E-13 | 202 | 227 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.743 | 203 | 225 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 203 | 225 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 205 | 225 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 297 aa Download sequence Send to blast |
MTMEVQVSNE SPDRHQTNTD ATTVKFKGKR TRRQRPPSPL ALTMACSSSS DSEARTAITR 60 QKLDDDEDSN PTTTATATVS RHSPESTKEE EEDMANCLIL LARGQGPIAP KDKVEASCTF 120 SCKTCGRSFP SFQALGGHRA SHKKPRLNDE DKNNKPIHVT MKGNDTGDKQ RIVDACTALS 180 LQITPAGGPA MLSSGNKSSN KVHECSICGA EFSSGQALGG HMRRHRPVTS GSGASNTEPE 240 IKKGRQGQGL PDLDLNLPAP ATEEEEREAA AEYAFASKEQ VLVFSTSPLA LVDCHY* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.A01622.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010050475.1 | 0.0 | PREDICTED: zinc finger protein ZAT5 | ||||
TrEMBL | A0A059DFI5 | 0.0 | A0A059DFI5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010050475.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6347 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28200.1 | 2e-39 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.A01622.1.p |
Entrez Gene | 104439048 |