PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01572.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 439aa    MW: 49263.8 Da    PI: 6.3635
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01572.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix27.48.8e-0991152149
          trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkq 49 
                       +Wt+ +v++Li a+ +++++ + +              +kk++W++vs++m+e+gf  ++ +
  Eucgr.A01572.1.p  91 KWTDTMVKLLIMAVLYIGDEGGPTTessdpkkkpgsllQKKGKWKSVSRAMMEKGFYGTACR 152
                       7**************99999996544567888899999*****************9766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.7E-789189No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MLGLEMSLHQ QQNPPPNSQN PHSLHHPQLV AYAHHEADHH HPQPQPAKPG YAFAGKSKQQ  60
LTLSDDDEAG FNGDDGAGDG KRKASPWQRM KWTDTMVKLL IMAVLYIGDE GGPTTESSDP  120
KKKPGSLLQK KGKWKSVSRA MMEKGFYGTA CRVVENQSLL EVMDLSTKMK EEVKKLLNSK  180
HLFFREMCAY HNSCGHGPGG SGGAGGAHHS PEVAVEPSHI QQQQQVPQRG CFHAADSAAG  240
DHLGKTETEA SKMLKGGSCE EEYGDDEDED SEDEDDDDSD DEVGEGGSRG HSGQGHEDEH  300
EHSERTSSLK RPRKYLFPPP TMFVQQLSGE ATGVMQDGNR SPWEKKQWMK VKLVQLEEQR  360
VSYQLQAYEL EKQRLKWLKF SGKKERDMER AKLENERRRL ENERMVLLLR QKELELLDLQ  420
QQQQHSSNKR SEPSSITG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308314LKRPRKY
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01572.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069064.10.0PREDICTED: uncharacterized protein LOC104456045
TrEMBLA0A059DFB80.0A0A059DFB8_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010069064.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-37sequence-specific DNA binding transcription factors