PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A01571.1.p
Common NameEUGRSUZ_A01571
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 517aa    MW: 55271 Da    PI: 8.3932
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A01571.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.63.4e-18135221186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W++  + +L+ea++e+ ++l+rg+l++ +Weev+  +  r  + ++s +qCk+k +nl+kryk +++++ ++   s+s++p+f++le
  Eucgr.A01571.1.p 135 EWSDAAIACLLEAYTEKFTQLNRGNLRGRDWEEVATTVseRCDKQTKSVEQCKNKVDNLKKRYKLERHRMTNG-GISVSHWPWFKKLE 221
                       5*************************************666668899************************99.67778*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.4E-21133223No hitNo description
Gene3DG3DSA:3.40.1160.108.2E-73267509IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.756275510IPR015963Uridylate kinase, bacteria
SuperFamilySSF536337.99E-59276509IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.23E-123278510No hitNo description
PfamPF006962.9E-26279489IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
QRYAPPPPPS PAPPKSTPIH APPPQQPPPS PKATGAEVRE EGGDDDYGDA AFHDVNPFSA  60
DEGSNPFNAA GSDPSKSRAD GRSDKRKSQD ELSDGGTPYN YKKTKASASS ASAAAGGAAG  120
GSSGGGGEYR KDREEWSDAA IACLLEAYTE KFTQLNRGNL RGRDWEEVAT TVSERCDKQT  180
KSVEQCKNKV DNLKKRYKLE RHRMTNGGIS VSHWPWFKKL EEIVGNSLPV KSPSEDDKGG  240
AASATSVKQS KRHAVVTTCQ GNPVNNIKSK SLSNPRWRRV VFKISGAALA GTGQNNIDPK  300
VAMLIAREVM MACRLGVQVA IVVGGRNFFC GNTWVTATGL DRCTAYQIGM MATVMNSVLL  360
QSALEKMGVQ TRVQSAFPMQ EVAEPYSRQR AIRHLEKGRV VIFGGIGAGT GNPLFSTDTA  420
AALRASEIHA EALLKGTNVD GVYDCNSQDN NVTFDHITYR DMGARGATSI DMMALTFCED  480
NGIPVVVFNL LEAGNISRAL CGDQVGTLID QAGRIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A3e-652695091239Uridylate kinase
3ek5_B3e-652695091239Uridylate kinase
3ek5_C3e-652695091239Uridylate kinase
3ek5_D3e-652695091239Uridylate kinase
3ek5_E3e-652695091239Uridylate kinase
3ek5_F3e-652695091239Uridylate kinase
3ek6_A3e-652695091239Uridylate kinase
3ek6_B3e-652695091239Uridylate kinase
3ek6_C3e-652695091239Uridylate kinase
3ek6_D3e-652695091239Uridylate kinase
3ek6_E3e-652695091239Uridylate kinase
3ek6_F3e-652695091239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A01571.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018730296.10.0PREDICTED: annexin B11
TrEMBLA0A059DFT90.0A0A059DFT9_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010069051.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein