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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A01544.1.p | ||||||||
Common Name | EUGRSUZ_A01544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HSF | ||||||||
Protein Properties | Length: 258aa MW: 27565.1 Da PI: 4.4633 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 73.8 | 3.1e-23 | 148 | 206 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k++++++d++l+ +isw ++g+sfvv+d+ efa++vLp+ Fkh nf+SFvRQLn+Y Eucgr.A01544.1.p 148 FLSKTFDLVDDRSLDPIISWGSSGESFVVWDPVEFARSVLPRNFKHGNFSSFVRQLNTY 206 9*********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.3E-24 | 142 | 206 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.98E-22 | 144 | 206 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.7E-20 | 144 | 228 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.6E-19 | 148 | 206 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.2E-11 | 148 | 171 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.2E-11 | 186 | 198 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.2E-11 | 199 | 211 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MNPEEERYPK SPPGSPDRGR GKGKAPAGAG SSSSAALQPE TPSFVMGSEA LPSGSFFDME 60 SIGLSGSPLP LMEFEAFSPL NTSSSFDLFF EVKPEPVLET TRPLGPPFGA GAAETEEAGF 120 PARGGDMETT VGAPQPLERL QGTPVPPFLS KTFDLVDDRS LDPIISWGSS GESFVVWDPV 180 EFARSVLPRN FKHGNFSSFV RQLNTYVGIC WNTAFIGCCS LSVNAFFSLC LFLGSARLTL 240 IDGSLLMKLF REGRGNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1hks_A | 4e-16 | 142 | 206 | 1 | 65 | HEAT-SHOCK TRANSCRIPTION FACTOR |
1hkt_A | 4e-16 | 142 | 206 | 1 | 65 | HEAT-SHOCK TRANSCRIPTION FACTOR |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A01544.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010049896.1 | 1e-142 | PREDICTED: heat stress transcription factor A-3 isoform X1 | ||||
TrEMBL | A0A059DEQ9 | 0.0 | A0A059DEQ9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010049896.1 | 1e-141 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22902 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 1e-35 | heat shock transcription factor A3 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A01544.1.p |